Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq135 304 3e-77 >seq135 Length=88816 Score = 304 bits (336), Expect = 3e-77 Identities = 1028/1572 (65%), Gaps = 68/1572 (4%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||||||||| ||| |||||||||| || || | |||| ||||| | |||||| Sbjct 30160 ATGAAGGACGACAGCATTGAGGGTATCTACGATACTTTGAAGACATGTGCCATGATTTCC 30101 Query 363682 AAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 |||| || || || || || | | || ||||| | | ||||| |||| | ||| | Sbjct 30100 AAGATGGCTGGTGGTATCGGCCTCAACG-TCCACCGTATCCGTGCCACAGG-CTCTTATA 30043 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 | ||||||| || ||| || || | | |||||||||||||| || |||| | Sbjct 30042 TCGCCGGCACAAACGGTACCTCCAACGGTATCATCCCCATGCTTCGTGTCTTCAACAACA 29983 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCG 363859 |||| || |||||||||||||||||| ||||| || || ||||| || || |||| Sbjct 29982 CTGCCAGATACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCG 29923 Query 363860 AGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC-ACGGGAA--AAG 363916 ||||| || |||||| | |||||||| ||||| ||||| || ||| |||| || ||| Sbjct 29922 AGCCTTGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAG 29863 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 ||| | ||||| ||||| |||||| || || ||| | |||| | || ||||||| Sbjct 29862 AGG---TCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGC 29806 Query 363977 GCGTGGAGGCAGGTA--AGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC 364034 |||| ||| | | | | ||||| | | | ||||| | ||||| || || ||| | Sbjct 29805 GCGTCGAG--AAGAACTTGGATTGGACTTTGATGTGCCCTAATGAATGCCCTGGCCTTGC 29748 Query 364035 CGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAG 364092 || || ||| || || || | | ||||| || || |||||||| ||||||| Sbjct 29747 TGACTGCTAT--GGCGAGGAATTCGAGGCTCTGTATGAGAAGTATGAGAAGGAGGGACGT 29690 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 | ||| ||||| || | || |||||||| |||| | ||| |||| | |||| |||| Sbjct 29689 GGTCGCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCTATCCTGGAGGCCCAGACTGAG 29630 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || || | |||| ||| | ||||| ||| |||||||||||| ||||||| || || Sbjct 29629 ACTGGTAACCCCTTCATGCTCTACAAGGATAGCTGCAACCGCAAGAGCAACCAGAAGAAC 29570 Query 364213 CTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 || || || | || |||| |||||| || || ||||||||||| ||| | || || || Sbjct 29569 CTGGGAACCA-TCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTCTGCGCCTGA 29511 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGA 364325 ||| || || || ||| | || || | || || || || ||||| || || Sbjct 29510 TGAGGTCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCTTTTGTCGACTACAACGA 29451 Query 364326 TGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGA 364385 || | |||| | | ||| | || || || | | | | || ||| | Sbjct 29450 AGGATGCTATGACTTTAAAAAGCTTCACGAAGTTACAAAGGTGGTTGTCCGTAACCTCAA 29391 Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATG 364440 | | ||||| ||| || || || ||| || || || ||| || | Sbjct 29390 CCGCATCATCGATGTGAACTACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACAGC 29336 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC--A 364498 ||||| || || |||||| ||||||| ||||| || ||||| | ||| | ||||| Sbjct 29335 CGTCACCGACCCATTGGTGTTGGTGTCCAGGGACTTGCTGATGCTTTCCT--TGCTCTGC 29278 Query 364499 AGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGT 364558 | | || || || || || ||||||| || || ||| | |||||||| || || | Sbjct 29277 GTCTTCCCTTCGAATCACCCGAAGCTCGTGAGCTGAACAAGCAAATCTTTGAGACCATCT 29218 Query 364559 ATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGG--GAAAG----TACT 364612 | ||| || | || || | ||| | |||||| ||| | || | Sbjct 29217 ACCATGCTGCCCTTGAGGCCTC------TATGGAGATTGCCAAGGTTGAAGGTCCTTATT 29164 Query 364613 CTACTTATGAGGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 | | | |||| || ||| | | | ||| | || || | ||| | ||| ||||| Sbjct 29163 CGTCATTCAAGGGATCACCCGCCTCTGAAGGCATTCTT-CAATATGACATGTGGGATGTC 29105 Query 364672 ACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTAC 364730 | ||| | | || ||| | |||||| |||| | | ||| ||||| |||| ||| Sbjct 29104 AAGCCCACCGACCTGTGGGAGTGGGATTCGCTCAAGGAGCAA-ATTAAGGAGCACGGTCT 29046 Query 364731 TCGCAA---CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 |||||| || ||||| || || |||||||| || ||| | |||||| | || Sbjct 29045 TCGCAACAGCTTGCTCGT---CGCCCCTATGCCCACTGCCAGCACTTCCCAGATCTTGGG 28989 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 ||||||||||| || || || | || ||| | || || || || ||| | || Sbjct 28988 TAACAACGAGTGTTTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGG 28929 Query 364848 AGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGG 364907 || || | ||| || || | || ||||||||||| ||| ||| || ||| Sbjct 28928 CGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACCGGCCTTTGGTC 28869 Query 364908 TGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATT 364967 || ||||||||| ||||| || | || || ||| | ||||||||||| | Sbjct 28868 CGATGCTATGAAGAACCGCATCATTGCTGAGAACGGCTCTATCCAGAACATTCCCAACAT 28809 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCAT 365027 ||| | || | ||| | | ||||| || || ||||| ||||| | | || || Sbjct 28808 TCCCGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATTTC---TCAACGTCAAAT 28752 Query 365028 TG---ATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 || | ||| | ||||| || |||||||| || |||| |||||| || ||| | Sbjct 28751 TGTCCAGATGTCAGCCGACCGTGGTGCTTTCATTGATCAGTCCCAGTCCTTGAACATCCA 28692 Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144 ||||| | || || | |||| |||| |||||||||| || ||||| || Sbjct 28691 CATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCATTTCACTGGCTGGAAGCTTGG 28632 Query 365145 TCTTAAGACAGG 365156 ||| ||||| || Sbjct 28631 TCTCAAGACTGG 28620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303329569825298