Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq5 84.2 2e-11
seq219 82.4 7e-11
>seq5
Length=314554
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | || || || || | || || || |||| ||| | || || ||| |
Sbjct 52553 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 52494
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
|||||||||||| | ||||| ||||| ||||| || ||||| || || ||
Sbjct 52493 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 52434
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
|| ||| || |||| | || || ||||| ||||| |||| | | | | | ||||| ||
Sbjct 52433 CCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 52374
Query 24167 TAACATTCAAAAAGAATCTAC 24187
||||| || || || |||||
Sbjct 52373 CAACATCCAGAAGGAGTCTAC 52353
>seq219
Length=54288
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCAT 104651
||| ||||| || || || || || || || |||||||| |||||||||| || | |||
Sbjct 42473 GTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATGTTCTCCAT 42532
Query 104652 AAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711
||| || || || || | | ||| | || |||| || || ||| | ||| ||
Sbjct 42533 AAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGAGAGCGACAAGCAGACG 42592
Query 104712 ATCCGCCACAAATTCGATGTACTCGCACAT-AGAATGTGCATTCATGCCCAGCATTGCGA 104770
||| || ||||| || ||||||| ||| || || || ||||||||||| | |||
Sbjct 42593 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTG-GCGTTCATGCCCAGAAGAGCGC 42651
Query 104771 CGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGAT 104804
|| | ||| | ||| || || || | ||||||
Sbjct 42652 AAGGGAGAGCCTCAGTCAAGAACTCCTGCTCGAT 42685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429928459863045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |