Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 seq219 82.4 7e-11 >seq5 Length=314554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || |||| ||| | || || ||| | Sbjct 52553 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 52494 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 52493 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 52434 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| || |||| | || || ||||| ||||| |||| | | | | | ||||| || Sbjct 52433 CCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 52374 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 52373 CAACATCCAGAAGGAGTCTAC 52353 >seq219 Length=54288 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCAT 104651 ||| ||||| || || || || || || || |||||||| |||||||||| || | ||| Sbjct 42473 GTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATGTTCTCCAT 42532 Query 104652 AAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711 ||| || || || || | | ||| | || |||| || || ||| | ||| || Sbjct 42533 AAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGAGAGCGACAAGCAGACG 42592 Query 104712 ATCCGCCACAAATTCGATGTACTCGCACAT-AGAATGTGCATTCATGCCCAGCATTGCGA 104770 ||| || ||||| || ||||||| ||| || || || ||||||||||| | ||| Sbjct 42593 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTG-GCGTTCATGCCCAGAAGAGCGC 42651 Query 104771 CGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGAT 104804 || | ||| | ||| || || || | |||||| Sbjct 42652 AAGGGAGAGCCTCAGTCAAGAACTCCTGCTCGAT 42685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429928459863045