Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq135 154 1e-32 seq5 134 1e-26 seq38 125 7e-24 seq287 98.7 9e-16 >seq135 Length=88816 Score = 154 bits (170), Expect = 1e-32 Identities = 953/1507 (63%), Gaps = 37/1507 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| |||||||| || | ||||| ||| || | ||| || ||| |||| Sbjct 28911 TTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 28970 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 |||||| ||||||| || |||| ||| || | || | || |||||||| || || Sbjct 28971 TCAAAACACTCGTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCGACG 29030 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||| || ||||||| ||| || | ||||| |||| | |||| ||||| Sbjct 29031 AGCAAGCTGTTGCGAAGACCGTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCCCAC 29090 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG-GCT 145296 || || ||| | || ||||||||||| || || | |||||| || |||||| | | Sbjct 29091 AGGTCGGTGGGCTTGACATCCCACATGTCATATTGAAGAATGCCTTCAGAGGCGGGTGAT 29150 Query 145297 GCCTTGAA--AGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 ||||||| | ||| ||| || | ||||| | ||| | ||||| || Sbjct 29151 CCCTTGAATGACGAA---TAAGGACCTTCAACCTTGGCAATCTCCATAGAGGCCTCAAGG 29207 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC-----AGCATCGCTTCATCGC 145409 || | || || ||||| |||||| |||| ||| ||| ||| | || Sbjct 29208 GCAGCATGGTAGATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAGCTTCGGGTGAT--- 29264 Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469 ||| | || | ||||| | |||||||| || || ||||| | || || || | Sbjct 29265 --TCGAAGGGAAGACGCAGAGCAAGGAAAGCATCAGCAAGTCCCTGGACACCAACACCAA 29322 Query 145470 TGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCG 145528 |||| || || ||||||| | | ||| || | ||| || | | | || ||| Sbjct 29323 TGGGTCGGTGACGGCTGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAGTTCAC-ATCG 29381 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCA 145588 || || || | ||| || || || |||||||||| | | | ||||| ||||||| Sbjct 29382 ATGATGCGGTTGAGGTTACGGACAACCACCTTTGTAACTTCGTGAAGCTTTTTAAAGTCA 29441 Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 | | | |||| | | ||| | | || || | || ||||| || || || Sbjct 29442 TAGCATCCTTCGTTGTAGTCGACAAAAGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACA 29501 Query 145649 GCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 || ||| || |||| | ||| | | ||||| | ||| | ||| | ||| Sbjct 29502 GCGACCTCATCAGGCG-CAGAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGAT 29560 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||||||||| || | ||| || || || | |||||| ||||||||||||||| | || Sbjct 29561 GGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATGAAGGG 29620 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTG 145827 |||||||| ||| | ||||| |||| | || | ||| || || | Sbjct 29621 GTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCACAGCTTCTGAGCTCGGATAGT 29680 Query 145828 CTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTA 145887 || | || ||||| | || || ||| || || |||| || | || || Sbjct 29681 CTTGCGACCACGTCCCTCCTTCTCATACTTCTCATACAGAGCCTCGAATTCCTCGCCATA 29740 Query 145888 GCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTT 145947 ||| || | ||||| || || | || || ||||||| | ||| | ||| | Sbjct 29741 GCAGTCAGCAAGGCCAGGGCATTCATTAGGGCACATCAAAGTCCAATCCAAGTTCTTCTC 29800 Query 145948 GACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCA 146007 |||||||| ||| |||| ||| || | ||| || ||| | || ||| || || | Sbjct 29801 GACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGAC 29860 Query 146008 ATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCAC 146065 || || || ||| | || | | ||| | ||| | ||| || |||||||| Sbjct 29861 CTCTTCCTTGCCGTGGTTCTTGC-GGAGGTCAAGGA-ACTCAAAGACATCGGCGTGCCAA 29918 Query 146066 GGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGT 146122 || || | |||| ||| | ||| || || ||| ||||||||||| |||| | Sbjct 29919 GGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTATCTG 29978 Query 146123 ACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAG 146182 | ||||||| ||||| || | |||||| || ||| ||| ||||| || | Sbjct 29979 GCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCCG 30038 Query 146183 TTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGTA 146241 || | ||| || || | | || || || | ||||| ||| || ||| | Sbjct 30039 GCGATATAAGAGCCTGTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCCAT- 30097 Query 146242 CTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CT 146298 |||||| || ||| || ||| | | || |||||||| || |||||||| ||| || Sbjct 30098 CTTGGAAATCATGGCACATGTCTTC-AAAGTATCGTAGATACCCTCAATGCTGTCGTCCT 30156 Query 146299 TCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAA 146358 || ||| | | || ||||| ||| | | ||| || ||| || || || ||| | Sbjct 30157 TC--ATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAG 30214 Query 146359 CGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTC 146418 || ||| ||| || ||||| | ||| | | ||| | | || || || | | Sbjct 30215 GGTGGGGGACGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACG 30274 Query 146419 TTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTC 146478 | ||||| ||| || |||||| | ||| || ||||| | |||||| || |||||||| Sbjct 30275 CTCAATGTTGTCTCCCCAAATGCCAACAGCCACTCGCATAATCATGTGCTGTGGCCGCTC 30334 Query 146479 CGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAAA 146537 | | |||| |||| ||| | | ||| ||||||||| ||| | ||||| Sbjct 30335 AACAATCTTG-CCATCAAGCTTCAGGAGATATGATCGCTCCAGGGTCTTGAAGCCGAAGT 30393 Query 146538 ATTTGTA 146544 ||| ||| Sbjct 30394 ATTGGTA 30400 >seq5 Length=314554 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||||| Sbjct 52323 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 52382 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| || |||||||||||||| || Sbjct 52383 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 52442 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 52443 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 52502 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 52503 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549 >seq38 Length=159530 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | || |||||||| || |||||||| ||| | Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||||| Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACC 138827 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | || | ||| || ||||| || ||||| |||| Sbjct 138826 TCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGACGA 138790 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| || |||||||| ||| | Sbjct 138721 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138662 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 138661 AGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 138602 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || |||| ||||| | Sbjct 138601 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 138542 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| || |||||| Sbjct 138541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 138494 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || || || | ||| |||||| || |||||||| ||||| Sbjct 139235 GCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 139176 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||| || |||||||| || || |||| | |||||||||||| || || Sbjct 139175 CAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGG 139116 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || |||| | || | ||||| | ||||| | Sbjct 139115 AATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCAC 139056 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||||| ||| || ||||| |||||||| Sbjct 139055 CTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 >seq287 Length=39990 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || || ||| || ||||| ||||||||||| ||| ||| Sbjct 4475 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 4534 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||| ||||| || ||||| || ||||| ||| || ||||| | | Sbjct 4535 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4594 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 4595 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4654 Query 131225 AA 131226 || Sbjct 4655 AA 4656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004309669760