Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq38 86.0 5e-12
seq5 84.2 2e-11
>seq38
Length=159530
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || ||||||||||||| || || | | ||
Sbjct 138706 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCT 138647
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| || | || | ||||| ||||| ||| | |||||| |||||
Sbjct 138646 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 138587
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | |||||| | | | | |||||| | |||| || | |||||||||
Sbjct 138586 TGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 138527
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||| || || ||||| || || |||||
Sbjct 138526 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495
>seq5
Length=314554
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| || || || |||||||| || |||||||||||| |
Sbjct 52323 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 52382
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | || || || || | || | ||||| |||||| ||
Sbjct 52383 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 52442
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| || | ||| || | | | | |||||| | ||||
Sbjct 52443 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 52502
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | |||||| || || || || || || ||||| ||||||||||| |||
Sbjct 52503 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 52553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405080895642610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |