Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq219 181 1e-40 >seq219 Length=54288 Score = 181 bits (200), Expect = 1e-40 Identities = 486/731 (66%), Gaps = 19/731 (3%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CGTA 92984 ||| || ||||| || |||||||| ||||| | ||||| || |||||| || | Sbjct 42593 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGAAGAGCGCA 42652 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 ||| ||||| || |||||||| || | ||||||| ||||| || | | ||| || Sbjct 42653 -AGGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATGTCAC 42711 Query 93045 T--TACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 || ||| || ||| | | || | | | | | | | || ||| ||||||| Sbjct 42712 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAG---GCAAGCAAAGT 42768 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | || || | ||| ||||| || || || | ||| ||| ||| || | ||| || | | Sbjct 42769 CAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGA 42828 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | |||| ||||||||||| || || || ||||| || || || ||||| || | Sbjct 42829 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAA 42888 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CT-GATCCATT 93278 | || ||||| || || | ||| | |||||| | || || || || |||||| | Sbjct 42889 CAGCAGCAAAGGCAACGAGACGCTGGGCAAA---GGAAGAGTTCTTGTCCTGGATCCACT 42945 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | | ||||| ||||| || || ||| ||||| | || || |||||||| || |||| Sbjct 42946 TGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGT 43005 Query 93339 AATCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 | |||| | | | || | | ||| || ||||| | |||||| || | || || Sbjct 43006 AGGTGCGCTGGCTGTGCTCCTTG-ACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAG 43064 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 |||| |||||||| || ||||| |||||||| |||| ||| || | |||||| || Sbjct 43065 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACC 43124 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 || || | ||| || || || || ||||| || || || || || ||||| || Sbjct 43125 TCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAG 43184 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGAT 93574 |||| || || || || | ||||| ||||| || | | || | ||| ||| Sbjct 43185 GCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGC 43244 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | ||| || || ||||| | || ||| | ||||| || || || || || || |||||| Sbjct 43245 AAATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTAC 43304 Query 93635 ATATCCCATAT 93645 || | ||| || Sbjct 43305 ATTTGCCAGAT 43315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556850783466360