Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq219 181 1e-40
>seq219
Length=54288
Score = 181 bits (200), Expect = 1e-40
Identities = 486/731 (66%), Gaps = 19/731 (3%)
Strand=Plus/Plus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CGTA 92984
||| || ||||| || |||||||| ||||| | ||||| || |||||| || |
Sbjct 42593 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGAAGAGCGCA 42652
Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
||| ||||| || |||||||| || | ||||||| ||||| || | | ||| ||
Sbjct 42653 -AGGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATGTCAC 42711
Query 93045 T--TACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101
|| ||| || ||| | | || | | | | | | | || ||| |||||||
Sbjct 42712 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAG---GCAAGCAAAGT 42768
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
| || || | ||| ||||| || || || | ||| ||| ||| || | ||| || | |
Sbjct 42769 CAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGA 42828
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
| |||| ||||||||||| || || || ||||| || || || ||||| || |
Sbjct 42829 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAA 42888
Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CT-GATCCATT 93278
| || ||||| || || | ||| | |||||| | || || || || |||||| |
Sbjct 42889 CAGCAGCAAAGGCAACGAGACGCTGGGCAAA---GGAAGAGTTCTTGTCCTGGATCCACT 42945
Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338
| | ||||| ||||| || || ||| ||||| | || || |||||||| || ||||
Sbjct 42946 TGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGT 43005
Query 93339 AATCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397
| |||| | | | || | | ||| || ||||| | |||||| || | || ||
Sbjct 43006 AGGTGCGCTGGCTGTGCTCCTTG-ACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAG 43064
Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457
|||| |||||||| || ||||| |||||||| |||| ||| || | |||||| ||
Sbjct 43065 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACC 43124
Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517
|| || | ||| || || || || ||||| || || || || || ||||| ||
Sbjct 43125 TCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAG 43184
Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGAT 93574
|||| || || || || | ||||| ||||| || | | || | ||| |||
Sbjct 43185 GCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGC 43244
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
| ||| || || ||||| | || ||| | ||||| || || || || || || ||||||
Sbjct 43245 AAATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTAC 43304
Query 93635 ATATCCCATAT 93645
|| | ||| ||
Sbjct 43305 ATTTGCCAGAT 43315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556850783466360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |