Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq38 122 7e-23
seq5 105 6e-18
seq287 89.7 4e-13
>seq38
Length=159530
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||||||||| || || |||| || || ||||| | |
Sbjct 139008 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACAATCACACTGGAGGTGGAGTCATCT 139067
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || ||||| ||| || || ||||||||||||||||| || || ||
Sbjct 139068 GATACCATCGACAATGTCAAATCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 139127
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| ||||| || || ||| | || || || ||| | ||| ||||||
Sbjct 139128 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACTACAAC 139187
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||| | || || ||| | || |||| || ||
Sbjct 139188 ATCCAGAAGGAGAGCACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 139234
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || || |||| || || ||||| | ||
Sbjct 138495 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 138554
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || | || || || || ||||||||||| ||||| || || ||
Sbjct 138555 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 138614
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| ||| | || ||| ||| || | ||||| ||||||
Sbjct 138615 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACTACAAC 138674
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||||| | || || ||| | || | || || |||
Sbjct 138675 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGCCTTCGTGGTGGT 138722
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| ||||| | ||||| || || |||||||||| || || | |||||||| | |||
Sbjct 138792 GTCAAAACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCCGATACCATCGAC 138851
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
| |||| || || || |||||||||||||| || || || || || ||||| ||
Sbjct 138852 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTCATC 138911
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
|| || || || ||| | ||||| ||| || | ||||| |||||||| || || ||
Sbjct 138912 TTCGCTGGTAAGCAGCTTGAGGACGGCCGGACTCTGTCCGACTACAACATCCAGAAGGAG 138971
Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || | || || || | || |||| || |||
Sbjct 138972 TCTACTCTCCACTTGGTCCTTCGTCTGCGTGGTGGT 139007
>seq5
Length=314554
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || || || | || || || ||| |||| ||||| ||||| |
Sbjct 52552 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 52493
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| ||| | ||| | |||| || || || ||||||||||| ||||| || ||
Sbjct 52492 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 52433
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || | || || || || || ||| | |||||| ||||||| | ||| |||
Sbjct 52432 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 52373
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || || ||| | || | || |||| |||| || |||
Sbjct 52372 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 52322
>seq287
Length=39990
Score = 89.7 bits (98), Expect = 4e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 22223 AAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATA 22282
||| ||| || || || | || || || || |||| ||||| || || || |||| |
Sbjct 4660 AAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACA 4601
Query 22283 CCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAAC 22342
| | ||| || |||| || || || ||||||||||| ||||| || ||||| || |
Sbjct 4600 CGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAGCAGC 4541
Query 22343 GTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTC 22402
| | || || || ||||| ||| | |||||| ||| ||| | || || |||||||| |
Sbjct 4540 GATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTACAACATCC 4481
Query 22403 AAAA 22406
| ||
Sbjct 4480 AGAA 4477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419720638889035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |