Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq267 105 1e-17 seq219 98.7 2e-15 seq116 95.1 2e-14 >seq267 Length=43301 Score = 105 bits (116), Expect = 1e-17 Identities = 433/677 (64%), Gaps = 27/677 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || |||||||||||||||||||| ||| | | || ||||| || | Sbjct 11659 GTCGGCTCCCTCTCTGGTGGTTGGAAGATGAAGCTTGCCTTGGCCCGAGCCATGCTGAAG 11718 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| || | || || || || ||||| |||| | ||| | ||| Sbjct 11719 GGTGCCGATGTCCTCTTGTTGGACGAACCTACTAACCATCTGGATGTTGCAAACATTGCC 11778 Query 279816 TGGCTAGTGTCCTACCTAAC----CAGTCTGA----AGAATGTTTCTTCCCTCATTGTCT 279867 ||||| | | |||||| | || |||| | || |||| || || | Sbjct 11779 TGGCTTGAGAACTACCTCAAGACACACCCTGACATTACAA-GTTTGATC-------GTAT 11830 Query 279868 CTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATC 279927 ||||||||||||||||| | ||| ||| | | | || |||||||||| || Sbjct 11831 CTCACGACTCTGGCTTCTTGGATAACGTCACCACCGATATTTACCACTATGAGCCCAACA 11890 Query 279928 TGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGG 279987 ||||||| | ||| |||||||| | || ||||| ||||| ||||| Sbjct 11891 AGAAGCTCGCTTGCTACAAGGGCAACCTTGCCGCATTCGTTCAGCTTCGCCCCGAGGCCA 11950 Query 279988 CCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTC 280047 |||||| ||| || ||| | | ||| | |||||| || || | | Sbjct 11951 AGAGCTACTACACCCTTTCGGCATCCAATGTCCAGTTCAAGTTCCCTCCTCCTGGTATCC 12010 Query 280048 TGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 || || |||| || || || || ||||| | | |||||| || | | Sbjct 12011 TGACTGGTATCAAGTCTCAGACCCGTGCCATCATTCGTATGAGCAACGTCTCTTTCACCT 12070 Query 280108 ATCCCAATGGCCCCAACATCTTCAG--CA----GTGTCAA-CTCGCAGGTTTCTATGAAC 280160 ||||||| ||| || | ||||| || || || ||| | | ||| || | Sbjct 12071 ATCCCAA-GGCTCCTAAGCCTTCACTCCAAGACGTCTCTTGCTCTCTG---TCTTTGTCC 12126 Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 ||||| | | | | ||||||||||| ||||| || ||||||||| | ||||| | || Sbjct 12127 TCACGAGTGGCTATTATTGGACCCAACGGTGCTGGCAAGTCTACCTTGATCAAGTTGCTT 12186 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 || || |||||| |||| | || || |||||| |||||| | || || | | Sbjct 12187 ACCGGTGAGACCATTCCCACCGTTGGTAAGGTCGAGAAGCACCCCAACCTTCGAATTGGT 12246 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 ||| || |||||||| | | ||| | |||| ||||| || | |||||| ||||| Sbjct 12247 TACATCAAGCAGCACGCCCTAGAGCACGTTGAGATGCACCTTGAGAAGACTCCCAACCAG 12306 Query 280341 TACATTCAGTGGCGCTA 280357 || | || ||||| || Sbjct 12307 TATTTGCAATGGCGATA 12323 >seq219 Length=54288 Score = 98.7 bits (108), Expect = 2e-15 Identities = 527/833 (63%), Gaps = 37/833 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| ||||||| || |||||| ||||| |||||||| | | Sbjct 42492 TCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAG 42551 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | || || || || | | || || || |||||||| | Sbjct 42552 GACTTGTAGATCTTCTCGTTTCCGAGAGCGACAAGCAGACGATCGGCAACAAACTCAATG 42611 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | | ||||||||| | | | ||||| | |||||| | | Sbjct 42612 TACTGCTTCATCAGGTTGGCGTTCATGCCCAGAAGAGCGCAAGGGAGAGCCTCAGTCAAG 42671 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT------TCACCTGTGCCAGA 251796 || |||| ||| | || || || | || | || ||| ||| | Sbjct 42672 AACTCCTGCTCGATTCTGACGGCATCAGTGATGATGTCACGGATAATCTCCT-TGCTGGC 42730 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACCC 251853 | ||||| ||| | |||| ||||| || |||| | |||||||||| Sbjct 42731 GCG-----GTTCTTCAGGTGAGAGT---GGAGCAGGCAAGCAAAGTCAGTGTGCAGACCC 42782 Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913 ||||| ||| ||||| ||||||||| | ||| |||||||| | || | ||| || Sbjct 42783 TCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCTCTCTTCTTG 42842 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973 ||||||||||| | | ||||| ||| ||| | | |||||| ||| | | ||| Sbjct 42843 AGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCA 42902 Query 251974 ACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCT 252027 || || |||| ||||| || ||||||||| | |||| ||||| | Sbjct 42903 ACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGATGGCCCACTCG 42959 Query 252028 GCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCA 252087 |||||||| | || ||||| || || || || | ||||| || | |||| | Sbjct 42960 GCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCGCTGGCTG 43019 Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 | |||| || | | || | || |||||||| |||| || |||||| || | Sbjct 43020 TGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCTCCATC 43079 Query 252148 AACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACT-TCCGTGGAAAA 252203 | |||||| || | |||| || || | ||| || || | || ||| |||| Sbjct 43080 ATGATCTGGAAACCGTAGAAGCATCGAGCCTCGG--GGATCTGAACCTCGCCGCTGAAAC 43137 Query 252204 GTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGT 252263 | | | | |||||| | || ||||| || | | ||||||||| | || ||| Sbjct 43138 G--CTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGATGTG 43195 Query 252264 CTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCG-GCAATGTCCTGAT 252322 |||||||| ||| || ||||| || || ||||||| |||| |||| Sbjct 43196 AGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAA-ATCCTTGG 43254 Query 252323 TCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 |||| || || || | |||||||| | | | | ||||||||||||||| Sbjct 43255 ACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATT 43307 >seq116 Length=98879 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| ||||| || || || |||| ||||||||||| ||| Sbjct 42893 GGCGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 42952 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | |||||||||| | || |||||||| ||||||||| || | Sbjct 42953 CAGACCCACCTCCGCCTCAAGCGTGGTCAGCGTTATGGTCTTTGCGGTCCCAACGGTTCC 43012 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 43013 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 43071 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 || || | ||| || | || |||||||| |||||||| || Sbjct 43072 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGATCTCGACTCCGCT 43117 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||||||||| || ||||| ||||| || ||| ||||| |||| | | || || Sbjct 44297 CACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCTTGGCCGCTTGC 44356 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || || Sbjct 44357 TCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGTGA 44415 Query 280823 GAGCCTGGGCGCTCTG 280838 ||||| || ||| Sbjct 44416 CTCTCTGGGTGCCCTG 44431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027817849580199