Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq38 185 2e-41 seq5 170 4e-37 seq219 159 6e-34 seq116 95.1 2e-14 >seq38 Length=159530 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || |||||||| || |||||||| || ||||| Sbjct 138721 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138662 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| |||||||| | |||||| |||||||| || | | || ||||| || ||| Sbjct 138661 AGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 138602 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || ||||||||||| | || || || Sbjct 138601 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 138542 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 138541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||| ||| || |||||||| || ||| Sbjct 139234 CCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 139175 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || || || || || | || ||||| || ||| Sbjct 139174 AGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 139115 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||||| ||||| |||||||| || | ||| || || Sbjct 139114 ATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACC 139055 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || || | ||||||||||| |||||||| Sbjct 139054 TCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 >seq5 Length=314554 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || || ||||| || |||||||| || ||| Sbjct 52323 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 52382 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || ||| Sbjct 52383 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 52442 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 52443 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 52502 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 52503 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549 >seq219 Length=54288 Score = 159 bits (176), Expect = 6e-34 Identities = 563/868 (65%), Gaps = 25/868 (3%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || |||||||||||||| || || |||||||||||||| |||||| Sbjct 42453 TTCATGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCG 42512 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | || |||||| |||||| |||||||||||||| || | ||| || Sbjct 42513 CCCAGAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTT 42572 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || | | || || || || ||||| |||||||| ||||||||| | | Sbjct 42573 CCGAGAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCG 42632 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | | ||| |||| || || | ||| |||| ||| | ||| Sbjct 42633 TTCATGCCCAGAAGAGCGCAAGGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACG 42692 Query 10173 GCTTCCTCGACGATG---CTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || || || |||| | | | | | | || | || ||| || | || Sbjct 42693 GCATCAGTGATGATGTCACGGATAATCTCCTTGCTGGCGCGGTTCTTC---AGGTGAGAG 42749 Query 10230 TACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 | || || |||| | ||| || |||||||| || ||||| ||||||||| Sbjct 42750 TGGAGCAGGCAAGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 42809 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCG 10349 || |||||| |||||||| || | || |||||||| |||| | || | ||| Sbjct 42810 AAGGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCG 42869 Query 10350 GAGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGT 10407 ||| | | |||||| || ||| | |||| ||||| |||| || ||||| | | | Sbjct 42870 CTGAAGAAGATACCCTCAACAGCAG-CAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTT 42928 Query 10408 CGCG--CGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | | | | | || ||||||| | |||||||| | | | |||||| ||||| Sbjct 42929 CTTGTCCTGGATCCACTTGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTC 42988 Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAA--TAAGAGCATCAAGGAGC 10523 ||||| | |||||| | | | |||| | | | |||| | || | | || | |||| Sbjct 42989 AATAGCGTTGAAGAGGTAGGTGCGCTGGCTGTGCTCCTTGACGTAGGTG--TCGATGAGC 43046 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACG 10582 || |||||| |||| ||||| | |||| | |||| || ||||||| ||| || Sbjct 43047 AGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CG 43105 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| |||| | || || || || | | ||||||||| | || ||||| Sbjct 43106 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 43165 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701 || | | ||||||||| | |||||||| |||||||| ||| |||||||||| Sbjct 43166 GTCCGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 43225 Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 ||| || |||||| || ||||| | || | | |||||| ||||||||| Sbjct 43226 GCGGTTGTT----CCAGTCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGA 43281 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 | | || | |||||||||||||| || Sbjct 43282 AGGAAGCCTCAGCCTTCTTGTACATTTG 43309 >seq116 Length=98879 Score = 95.1 bits (104), Expect = 2e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876 |||||| ||||| | ||| | || || ||||| | || ||| |||||| | || Sbjct 43066 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGAGTAGACTTGCCGGAACC 43007 Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAG 225936 |||||||||| || || ||| | | || ||||||| | |||| | || ||| || Sbjct 43006 GTTGGGACCGCAAAGACCATAACGCTGACCACGCTTGAGGCGGAGGTGGGTCTGGTTAAG 42947 Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 || |||||| |||| |||||||| ||||| ||| | ||| |||||||| |||||||| Sbjct 42946 CAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAAAGGTCCTCGCCCTCCTC 42887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921605822317080