Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq219 370 2e-97 seq135 233 4e-56 >seq219 Length=54288 Score = 370 bits (410), Expect = 2e-97 Identities = 609/862 (71%), Gaps = 32/862 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||| ||| Sbjct 43315 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 43256 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 43255 TCCAAGGATTTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 43197 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| || ||||| |||||||| ||||| |||||||||| | | Sbjct 43196 TCACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 43137 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || ||||||||||| |||||||| || Sbjct 43136 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 43077 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| |||| ||| || ||| | Sbjct 43076 GGAGAACATCCACTCCGAGACATACTC---TCTGCTCATCGACACCTACGTCAAGGAGCA 43020 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | || ||||| || || ||||| || || ||||| |||||||| Sbjct 43019 CAGCCAGCGCACCTACCTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGC 42960 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAG 42711 || ||||| |||| |||||| || | | | || | | || | | || | || || | Sbjct 42959 CGAGTGGGCCATCAAGTGGATCCAG-GACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTG 42901 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| | || || ||||| ||||||||| || ||||| ||||||||||||||||||| Sbjct 42900 CCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCA 42841 Query 42772 AGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || ||| |||| || ||||| || || |||||||| ||||| |||||| | |||||| Sbjct 42840 AGAAGAGAGGTCTC-ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 42782 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || ||||| | |||||||| ||||| || ||| ||||| | | || || Sbjct 42781 GGTCTGCACACTGACTTTGCTTGCCTGCTCCACTC---TCACCTGAAGAACCGCGCCAGC 42725 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 |||||| |||| | ||||||||| || ||||| |||||| |||||||| | || Sbjct 42724 AAGGAGATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACT 42665 Query 42951 CAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| || | || | ||||||||| | |||| ||| ||||||| | Sbjct 42664 GAGGCTCT-CCCTTGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGA 42606 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC--AGCCG----CCTCTACAACAC 43063 || || ||||| | ||| || || | | |||| | || ||||||| | Sbjct 42605 GTTTGTTGCCGATCGTCTGCT-TG-----TCGCTCTCGGAAACGAGAAGATCTACAAGTC 42552 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | |||||| ||||||||||||||||| || ||| |||||||||||||| ||||| Sbjct 42551 CTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGA 42492 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||||| |||| ||| |||||| Sbjct 42491 GAAGCGTGTCGGCGAGTACCAG 42470 >seq135 Length=88816 Score = 233 bits (258), Expect = 4e-56 Identities = 910/1415 (64%), Gaps = 49/1415 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || |||||||||| |||| | || || Sbjct 28910 GTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 28969 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | | ||| |||| |||| ||||| | ||||| ||||| ||||| || | || Sbjct 28970 CTCAAAACACTCGTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCGAC 29029 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||| ||||| | | |||||| || || | ||||| | ||| ||||| Sbjct 29030 GAGCAAGCTGTTGCGAAGACCGTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCCCA 29089 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || | | ||| | | |||| ||||||||||| | || || | || | | Sbjct 29090 CAGGTC-----GGT----GGGCTTGACATCCCACATGTCATATTGAAGAATGCCTT--CA 29138 Query 244330 GACGGGGCTG--CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT---TACAG 244384 || | || || |||| | | | || || ||||| || || ||| | || || || Sbjct 29139 GAGGCGGGTGATCCCTTGAATGACGAATAAGGACCTTCAACCTTGGCAATCTCCATAGAG 29198 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 ||| ||||| || | |||||||||||| ||||| |||||||| || || || Sbjct 29199 GCCTCA---AGGGCAGCATGGTAGATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAGCT 29255 Query 244445 TTGCCGCAGGTGAAGGG--GATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 | | | |||||| || || | || | ||| | || || |||||||| || | Sbjct 29256 TCGGGTGATTCGAAGGGAAGACGCAGAGCA--AGGAAAGCATCAGCAAGTCCCTGGACAC 29313 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 | | || ||||||| ||| || ||||| | || || | || ||||| ||| Sbjct 29314 CAACACCAATGGGTCGGTGACGGCTGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAGT 29373 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAG 244620 | | ||||| | ||||||||| ||| | || | | | || ||| ||| Sbjct 29374 TCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTTGTA--ACTTCGTGAAGCTT 29431 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 | |||||| || | ||||| | | || || || || | | ||| || Sbjct 29432 TTTAAAGTCATA-------GCATCCTTCG---TTGTAGTCGACAAAAGCAGG--GAGAGC 29479 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 | ||||| ||||||||| || ||||| || | | ||||| | |||||| || Sbjct 29480 CAAAGAGGCCAAGTTGCAGACAGCGACCTCATCAGGCGCAGAGTACTCAATAATCTCAGT 29539 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||||||||| || |||||| ||||||| || || ||| |||| ||||||| Sbjct 29540 GCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCT 29599 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||||||||||||||| || ||||| |||||| | |||| || ||| Sbjct 29600 ATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCA 29659 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 || | | ||| || ||| ||||| | ||||| ||| || ||||| Sbjct 29660 CAGCTTCTGAGCTCGGATAGTCTTGCGACCACGTCCCTCCTTCTCATACTTCTCATACAG 29719 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 |||||||| || ||| || || | ||||| ||||| |||||||| | Sbjct 29720 AGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCATTAGGGCACATCAA 29779 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 | |||| || | | || ||| | || |||||| || || ||||||||||| || | Sbjct 29780 AGTCCAATCCAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAG 29839 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||| ||||| | || | ||| ||| ||| |||||| | || || | || || Sbjct 29840 GAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTC 29899 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 |||||| ||| ||||||| ||||| | ||||| || | ||| || || |||||||| || Sbjct 29900 AAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTTCC 29959 Query 245161 TCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||||| || || | || | |||||||| || || | || | || |||| Sbjct 29960 ACCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGT 30018 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGG 245276 | ||| ||||| ||||| ||| || | ||| || | | || ||| | | || Sbjct 30019 TGGAGGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGACGTTG- 30077 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | ||| | || || || |||||| || | ||| || |||| | || || | Sbjct 30078 --AGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTATCGTAGA 30135 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG- 245395 | ||||| |||||||| |||||||| | || ||||| ||||| |||| | ||||| Sbjct 30136 TACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCT-GAGCTTGC 30194 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAAC 245455 ||| | | | |||||| || |||||| || ||||||||| | ||| || | || Sbjct 30195 GGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCTGGACATGAGG 30254 Query 245456 CCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCC 245490 ||| |||| || | | || |||||||| || Sbjct 30255 TGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC 30289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944322213698640