Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq38 118 3e-21 seq219 104 6e-17 seq5 104 6e-17 >seq38 Length=159530 Score = 118 bits (130), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || | |||| ||||| || || ||||| || |||||| Sbjct 139237 TGGCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 139178 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || || |||||||| | || || || || ||||| |||||||| || | Sbjct 139177 CTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 139118 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || |||||||| || | ||| || || || || | ||| || || Sbjct 139117 GGAATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCC 139058 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| | |||||||||||| |||||||| Sbjct 139057 ACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| || || ||||| || ||||||| Sbjct 138721 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138662 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || |||||||||| ||||| || | || Sbjct 138661 AGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 138602 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | ||||| || || || | ||| || || || Sbjct 138601 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 138542 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 138541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495 >seq219 Length=54288 Score = 104 bits (114), Expect = 6e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || || || | || ||| | |||||| | ||| ||| |||| || || | | || Sbjct 42697 GATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGC 42638 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGGC 269216 ||||| ||| | || ||||| || || || || || || || |||||| | ||| || | Sbjct 42637 ATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCG-C 42579 Query 269217 ACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTC 269276 ||||| | ||||| | ||||| || || ||||| | ||||||||| ||||| Sbjct 42578 TCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTC 42519 Query 269277 GCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGT 269336 || | || ||||| ||||||||||| ||||||||| |||| || || ||||||| Sbjct 42518 TCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCTGGTGT 42459 Query 269337 AATGAA 269342 ||||| Sbjct 42458 CATGAA 42453 >seq5 Length=314554 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| || || || | || || || |||||| Sbjct 52359 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAG 52418 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || || ||| || || || || |||||||| || | || ||| Sbjct 52419 ATCAATCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 52475 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || |||||||||||||| || || |||||| Sbjct 52476 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 52535 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 52536 ACGAAAATCTGCAT 52549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179632650490642