Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq219 123 5e-23
>seq219
Length=54288
Score = 123 bits (136), Expect = 5e-23
Identities = 318/474 (67%), Gaps = 8/474 (2%)
Strand=Plus/Minus
Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCG-GGA 243343
|| ||||| |||||||||| |||| | ||| ||||| ||||| || | ||| | |||
Sbjct 42922 TCCTTTGCCCAGCGTCTCGTTGCCTTTGC-TGCTGTTGAGGGTAT-CT-TCTTCAGCGGA 42866
Query 243344 GTTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402
| | ||| ||||||| ||||| ||| | |||| | |||||||| || | ||
Sbjct 42865 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCC 42806
Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462
|||||| ||||| ||| |||||||| || ||| | || | | || | | ||
Sbjct 42805 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCTCCACTCT 42746
Query 243463 AAGCTCCAGAACAA-GCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521
| || ||||| || | || || | || | |||||||| || || ||
Sbjct 42745 CACCTGAAGAACCGCGCCAGCAAG-GAGATTATCCGTGACATCATCACTGATGCCGTCAG 42687
Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581
|| ||| |||| ||| | || ||| | || ||| ||| | ||||||||| | |
Sbjct 42686 AATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAA 42627
Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641
|| ||| |||||||| || || || ||||| || | | |||| || || | ||
Sbjct 42626 CCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGA 42567
Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701
||| | ||||| ||| |||||||||| |||||||||| |||||| || || ||
Sbjct 42566 GAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAA 42507
Query 243702 AACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATGAA 243755
|| ||||||||||| ||||||||| | || || || ||||||| |||||
Sbjct 42506 GACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCTGGTGTCATGAA 42453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102859665994650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |