Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq219 123 5e-23 >seq219 Length=54288 Score = 123 bits (136), Expect = 5e-23 Identities = 318/474 (67%), Gaps = 8/474 (2%) Strand=Plus/Minus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCG-GGA 243343 || ||||| |||||||||| |||| | ||| ||||| ||||| || | ||| | ||| Sbjct 42922 TCCTTTGCCCAGCGTCTCGTTGCCTTTGC-TGCTGTTGAGGGTAT-CT-TCTTCAGCGGA 42866 Query 243344 GTTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 | | ||| ||||||| ||||| ||| | |||| | |||||||| || | || Sbjct 42865 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCC 42806 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| ||||| ||| |||||||| || ||| | || | | || | | || Sbjct 42805 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCTCCACTCT 42746 Query 243463 AAGCTCCAGAACAA-GCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | || ||||| || | || || | || | |||||||| || || || Sbjct 42745 CACCTGAAGAACCGCGCCAGCAAG-GAGATTATCCGTGACATCATCACTGATGCCGTCAG 42687 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 || ||| |||| ||| | || ||| | || ||| ||| | ||||||||| | | Sbjct 42686 AATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAA 42627 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 || ||| |||||||| || || || ||||| || | | |||| || || | || Sbjct 42626 CCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGA 42567 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| | ||||| ||| |||||||||| |||||||||| |||||| || || || Sbjct 42566 GAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAA 42507 Query 243702 AACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATGAA 243755 || ||||||||||| ||||||||| | || || || ||||||| ||||| Sbjct 42506 GACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCTGGTGTCATGAA 42453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102859665994650