Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq38 116 4e-21
seq5 104 3e-17
>seq38
Length=159530
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||| |||||| || || ||||| || | ||||||||| | || ||
Sbjct 138703 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCG 138644
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||| || ||||| || | ||||||||||| | || | || |||||||||| |
Sbjct 138643 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 138584
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || || | | | | |||||| || ||||| |||| |||||||| |||
Sbjct 138583 ATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 138524
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || |||||||||||
Sbjct 138523 CCGGTGAGGGTCTTGACGAAGATTTGCAT 138495
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||||||||||| || || ||||| || ||| || || |||| ||
Sbjct 139216 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCC 139157
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||||||||| || || || ||||||||||| | || | | |||||||||| |
Sbjct 139156 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 139097
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| ||| ||||| | | | || || || ||||| || | ||||| || |||
Sbjct 139096 ATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTG 139037
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||| ||||| || ||||| |||||
Sbjct 139036 CCGGTTAAAGTCTTGACGAAGATCTGCAT 139008
Score = 104 bits (114), Expect = 3e-17
Identities = 133/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | ||||||||| |||| || |||||||||||||||||
Sbjct 138971 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAA 138912
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 138911 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 138853
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || ||| || || || || | |||||||| ||||| || || || || |
Sbjct 138852 TGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGA 138793
Query 42196 C 42196
|
Sbjct 138792 C 138792
>seq5
Length=314554
Score = 104 bits (114), Expect = 3e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || ||| || || | || || |||||||||||||||||
Sbjct 52358 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAA 52417
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | |||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 52418 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 52476
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| || ||||| || | ||||| || || ||||| || ||||| |
Sbjct 52477 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 52536
Query 42196 CAAAGATTTGCATTTT 42211
| || || ||||| ||
Sbjct 52537 CGAAAATCTGCATCTT 52552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543203028959760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |