Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 3e-15 >seq38 Length=159530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | ||| || ||||||| |||||||| || ||| | Sbjct 139198 TCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAG 139139 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || ||||| || || || || || || ||| || ||| Sbjct 139138 ATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGATTTGACATTG 139079 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | |||||| | ||||| || | || | ||||||||||| ||||| || ||| Sbjct 139078 TCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACG 139019 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 139018 AAGATCTGCAT 139008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | | || || | ||||| |||||| Sbjct 138697 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCGAGCTGC 138638 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | || | ||||||||||| |||||||| || || || || || || || Sbjct 138637 TTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTG 138578 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || || | ||||| || | || | |||||||||||| Sbjct 138577 GACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTG 138518 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| |||||||| Sbjct 138517 AGGGTCTTGACGAAGATTTGCAT 138495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || | || | || || || || || |||||||| || | Sbjct 139007 ACCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 138948 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| ||||||||||| || || | ||||| ||||||||||| ||||| Sbjct 138947 CAGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 138888 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | ||||| | || || Sbjct 138887 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGAC 138828 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 || | ||| | |||||||||||||| ||||| |||| Sbjct 138827 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGACGA 138790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635812639160