Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq135 221 1e-52 >seq135 Length=88816 Score = 221 bits (244), Expect = 1e-52 Identities = 610/925 (66%), Gaps = 10/925 (1%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| || || ||||| ||| | |||||| Sbjct 30403 AACTACCAATACTTCGGCTTCAAGACCCTGGAGCGATCATATCTCCTGAAGCTTGATGGC 30344 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| || || || || | ||||| || || | || ||| || || Sbjct 30343 AAGATTGTTGAGCGGCCACAGCACATGATTATGCGAGTGGCTGTTGGCATTTGGGGAGAC 30284 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 |||| | ||| | | | | | |||| ||| | |||| || Sbjct 30283 AACATTGAGCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCG 30224 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 |||| ||||| |||||||| || |||||| | ||| | || || || ||| || | Sbjct 30223 TCCCCCACCCTCTTCAACGCTGGTACCCCGCAAGCTCAGCTCTCCTCATGCTTCTTGGTT 30164 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| |||| ||| || || | ||| | | ||| ||||| | || Sbjct 30163 GAC-ATGAAGGACGACAGCATTGAGGGTATCTACGATACTTTGAAGACATGTGCCATGAT 30105 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 || || || || || ||||| ||| |||||| |||| ||||||| || || Sbjct 30104 TTCCAAGATGGCTGGTGGTATCGGCCTCAACGTCCAC--CGTATCCGTGCCACAGGCTCT 30047 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || ||| ||| || || || ||||||||||| || |||| ||||| || ||||||||| Sbjct 30046 TATATCGCCGGCACAAACGGTACCTCCAACGGTATCATCCCCATGCTTCGTGTCTTCAAC 29987 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || | ||||| ||||||||||| | | | ||| | || || |||| Sbjct 29986 AACACTGCCAGATACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTAC 29927 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| || || | ||| | ||||| || |||||||||||||| Sbjct 29926 CTCGAGCCTTGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAG 29867 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | ||| | ||||| ||| |||||||||| | || || || || ||||| Sbjct 29866 GAAGAGGTCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAG 29807 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 ||||||||||| |||| | |||| | | | || || |||||||| || || || | Sbjct 29806 CGCGTCGAGAAGAACTTGGATTGGACTTTGATGTGCCCTAATGAATGCCCTGGCCTTGCT 29747 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGC 94430 ||| | ||| | || || | |||||| || || | |||| | || Sbjct 29746 GACTGCTATGGCGAGGAATTCGAGGCTCTGTATGAGAAGTATGAGAAGGAGGGACGTGGT 29687 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| ||| ||| |||||||||| | ||| |||| | ||| ||||| Sbjct 29686 C-GCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCTATCCTGGAGGCCCAGACTGAGAC 29628 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| |||| ||| | | |||||| ||| |||| |||| ||||||| || ||| Sbjct 29627 TGGTAACCCCTTCATGCTCTACAAGGATAGCTG-CAACCGCAAGAGCAACCAGAAGAACC 29569 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || ||| ||||| || || ||||| |||||| | ||||| || | || || | Sbjct 29568 TGGGAACCATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTCTGCGCCTGATG 29509 Query 94610 AGATTGCTGTGTGTAACCTGGGCTC 94634 || | ||||| || ||| ||| ||| Sbjct 29508 AGGTCGCTGTCTGCAACTTGGCCTC 29484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494714301166440