Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq219 183 3e-41 seq38 118 1e-21 seq5 107 2e-18 >seq219 Length=54288 Score = 183 bits (202), Expect = 3e-41 Identities = 506/766 (66%), Gaps = 31/766 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| || ||| | || || Sbjct 43222 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCGGACGGC 43163 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCA 52204 || || ||| ||||| ||||| | |||||| | |||| | | |||||| | Sbjct 43162 ATTGTCAACGAGAACCTGGTCGAGCGTTT-CAGCGGCGAGGTTCAGATCCCCGAGGCTCG 43104 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || ||| || | | || ||| | | ||| | |||| ||| |||||| Sbjct 43103 ATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACATACTCTCTGCT 43044 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACG---AGCGCGACACGCTGCTGAATGCGTTCGA 52321 ||| || || || ||| |||||| ||||| | || | || || | || Sbjct 43043 CATCGA-CACCTACGTCAAG--GAGCACAGCCAGCGCACCTACCTCTTCAACGCTATTGA 42987 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 | | || ||| ||||||| ||||| ||||||| || ||||||||| || | | | Sbjct 42986 GACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAA 42927 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | | | | ||| |||| | || ||||| || || ||||| | || || ||| Sbjct 42926 CTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGG 42867 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 ||||||| ||||||| | | || | || ||| | ||||| || ||||| ||| Sbjct 42866 AGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTC 42807 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACT- 52557 ||||||| | || || || ||||| || |||||||| |||||||| ||||| | ||| Sbjct 42806 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCTCCACTC 42747 Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCA 52611 || |||| |||| | | | | |||| |||| ||| ||| ||| Sbjct 42746 TCACCTGAAGAACCGCGCCAGCAAGGA----GATT--------ATCCGTGA-CATCATCA 42700 Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 || || || ||||| ||||||| || || | || || || || || |||| Sbjct 42699 CTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGG 42640 Query 52672 GCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGC 52731 |||||||||| | ||| ||||||| |||||||| || ||||||||| | || Sbjct 42639 GCATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCG 42580 Query 52732 AGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 ||||| | ||| || ||| | ||| || ||||| |||||| | ||||||| Sbjct 42579 CTCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGAACATTT 42520 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || | |||||||||||||| ||||||||||| ||||||||||| Sbjct 42519 CTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 42474 >seq38 Length=159530 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | ||| || || | | | |||||| || |||||||||||||| Sbjct 139235 GCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 139176 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||| || || || ||||| | | |||| |||||||| ||||| || || Sbjct 139175 CAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGG 139116 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| ||| ||| | ||||| | | ||| || | ||||||| Sbjct 139115 AATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGT-CGATGGTATCAGATGACTCCA 139057 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || | ||| || || || |||||||| Sbjct 139056 CCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | | |||||||| || |||||||||||| || ||| || || || Sbjct 138704 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTC 138645 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||| || || |||| |||| | ||||| ||||| ||||| || || || ||||| Sbjct 138644 GAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 138585 Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 ||| || || | ||||| | | |||||||| ||||||||||||| || | || | Sbjct 138584 GATCTTGGACTTCACATTGT-CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCT 138526 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 | || || || || || || || || ||||||| Sbjct 138525 TGCCGGTGAGGGTCTTGACGAAGATTTGCATGG 138493 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | |||||||| || |||||||||||| | Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || ||||| | |||| |||||||| ||||| ||||| Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||| |||| ||||| ||| Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACC 138827 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | || | || || || ||||| ||||| || Sbjct 138826 TCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGAC 138792 >seq5 Length=314554 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || ||||||||||||||| Sbjct 52323 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 52382 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || ||||| | |||| | ||||| |||||||| || Sbjct 52383 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 52442 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 52443 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 52502 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || || || || || || ||||||||||| Sbjct 52503 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253473480080