Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq219 123 2e-23 seq38 120 3e-22 seq287 96.9 3e-15 >seq5 Length=314554 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | |||||||| || || || ||||| ||| Sbjct 52320 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 52379 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || ||||| ||| || ||||| || |||||| |||||||||||||||| || || Sbjct 52380 CTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 52439 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||||||||||||| ||| || ||||| |||| |||| |||||| | | ||| Sbjct 52440 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTC 52498 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 52499 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549 >seq219 Length=54288 Score = 123 bits (136), Expect = 2e-23 Identities = 355/541 (66%), Gaps = 19/541 (4%) Strand=Plus/Minus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| | | |||| || || ||| | |||| ||||||||||||||||| ||| Sbjct 43003 CTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAG 42944 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || | || | ||| | | ||| | ||| | | || || || || ||| Sbjct 42943 TGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAG 42884 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225 || |||||||| || |||||| | || || | | || | | ||| | ||| Sbjct 42883 GGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATG 42824 Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285 || || || || || ||||||||| ||||| | ||||| || |||||||| ||||| Sbjct 42823 CCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTT 42764 Query 47286 GCCTGTCT---CTACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTC 47339 || || || | ||| || | ||| || | | ||| | | |||| Sbjct 42763 GCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGAGATTAT-----CCGT- 42710 Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399 ||||| | | || |||||| || ||| |||||| || | |||||||| || Sbjct 42709 ---GACATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCT 42653 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 || | |||| |||||||| | |||||| ||||||| || ||||| ||||| Sbjct 42652 TGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGAT 42593 Query 47460 CGCCTGCTCGTTCAGCTAAAGTATCCCA--AGATTTACCACACCGAGAATCCATTCGAGT 47517 || ||||| || ||| | | | | |||| ||| | || || || || || | Sbjct 42592 CGTCTGCTTGTC--GCTCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACT 42535 Query 47518 TTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAAT 47577 ||||| | |||||||| || | |||||||||||||| ||||||||||| |||||||| | Sbjct 42534 TTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGT 42475 Query 47578 A 47578 | Sbjct 42474 A 42474 >seq38 Length=159530 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 138721 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138662 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| ||||||| |||||||| || ||||| Sbjct 138661 AGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 138602 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | | ||| || Sbjct 138601 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 138542 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || |||||||| || || || || || || ||||||| Sbjct 138541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGG 138493 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| ||| | Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| |||| | |||||||| || ||||| Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| ||||| ||| ||| || | |||||| Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTATCGGATGACTCGAC 138828 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | || | || ||||||||||| ||||| || Sbjct 138827 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGAC 138792 >seq287 Length=39990 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| ||||||||||||||||||| || || || |||||||| Sbjct 4509 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGAATTCCCTCCTT 4568 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| ||||| | |||||| || | ||| | Sbjct 4569 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGAT 4628 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 4629 GGTCTTGCCCGTCAGGGTCTTCACGAAA 4656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492246929360