Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 3e-29
seq219 123 2e-23
seq38 120 3e-22
seq287 96.9 3e-15
>seq5
Length=314554
Score = 143 bits (158), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| |||| || | |||||||| || || || ||||| |||
Sbjct 52320 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 52379
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || ||||| ||| || ||||| || |||||| |||||||||||||||| || ||
Sbjct 52380 CTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 52439
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062
|| ||||||||||||||| ||| || ||||| |||| |||| |||||| | | |||
Sbjct 52440 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTC 52498
Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || |||||||||||
Sbjct 52499 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549
>seq219
Length=54288
Score = 123 bits (136), Expect = 2e-23
Identities = 355/541 (66%), Gaps = 19/541 (4%)
Strand=Plus/Minus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| | | |||| || || ||| | |||| ||||||||||||||||| |||
Sbjct 43003 CTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAG 42944
Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165
| || | || | ||| | | ||| | ||| | | || || || || |||
Sbjct 42943 TGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAG 42884
Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225
|| |||||||| || |||||| | || || | | || | | ||| | |||
Sbjct 42883 GGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATG 42824
Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285
|| || || || || ||||||||| ||||| | ||||| || |||||||| |||||
Sbjct 42823 CCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTT 42764
Query 47286 GCCTGTCT---CTACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTC 47339
|| || || | ||| || | ||| || | | ||| | | ||||
Sbjct 42763 GCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGAGATTAT-----CCGT- 42710
Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399
||||| | | || |||||| || ||| |||||| || | |||||||| ||
Sbjct 42709 ---GACATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCT 42653
Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459
|| | |||| |||||||| | |||||| ||||||| || ||||| |||||
Sbjct 42652 TGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGAT 42593
Query 47460 CGCCTGCTCGTTCAGCTAAAGTATCCCA--AGATTTACCACACCGAGAATCCATTCGAGT 47517
|| ||||| || ||| | | | | |||| ||| | || || || || || |
Sbjct 42592 CGTCTGCTTGTC--GCTCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACT 42535
Query 47518 TTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAAT 47577
||||| | |||||||| || | |||||||||||||| ||||||||||| |||||||| |
Sbjct 42534 TTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGT 42475
Query 47578 A 47578
|
Sbjct 42474 A 42474
>seq38
Length=159530
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 138721 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138662
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || || ||| ||||||| |||||||| || |||||
Sbjct 138661 AGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 138602
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| |||||| | | ||| ||
Sbjct 138601 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 138542
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|||| ||| | || |||||||| || || || || || || |||||||
Sbjct 138541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGG 138493
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | |||||||| || || || ||||| ||| |
Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || |||||| |||| | |||||||| || |||||
Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| ||||| ||| ||| || | ||||||
Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTATCGGATGACTCGAC 138828
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | || | || ||||||||||| ||||| ||
Sbjct 138827 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGAC 138792
>seq287
Length=39990
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || |||||| ||||||||||||||||||| || || || ||||||||
Sbjct 4509 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGAATTCCCTCCTT 4568
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| ||||| | |||||| || | ||| |
Sbjct 4569 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGAT 4628
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| ||||| ||||| || || || |||
Sbjct 4629 GGTCTTGCCCGTCAGGGTCTTCACGAAA 4656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475492246929360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |