Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq135 237 2e-57 seq219 152 6e-32 >seq135 Length=88816 Score = 237 bits (262), Expect = 2e-57 Identities = 1175/1841 (64%), Gaps = 61/1841 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| || ||| ||| ||||| | || ||||||||||| || |||||||| | Sbjct 28573 TGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 28632 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| || | |||||| || | |||| | ||| ||| | |||| Sbjct 28633 CAAGCTTCCAGCCAGTGAAATGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 28692 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||||| ||||| ||||| ||||| || || || || | ||| | | || Sbjct 28693 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGA-CA 28751 Query 115706 CATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 || || | |||| | ||||| ||||| |||| ||| ||| || || | || Sbjct 28752 -AT--TTGACGTTGAGAAATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGA 28808 Query 115762 ATATCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCC 115818 || | || || ||||||||||| | || ||| || | | ||||||| | Sbjct 28809 ATGTTGGGAATGTTCTGGATAGAGCCGTTCTCAGCAATGA---TGCGGTTCTTCATAGCA 28865 Query 115819 TTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAAC 115874 | ||||| || || | | ||||||| | | ||| | |||||||| Sbjct 28866 TCGGACCAAAGGCCGGTATCGACAAGATCCTTGAGAAGCCAGGGG----TTGACAACCTG 28921 Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 ||||| || || ||| |||| | | |||||||||| ||||| |||||||| ||||| Sbjct 28922 GAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAACACTC 28981 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| ||| |||||||| || || | ||| | |||||| Sbjct 28982 GTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCGACGAGCAAGCTGTT 29041 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 ||| ||||| | || |||| | |||||||| | ||||| || | | | | Sbjct 29042 GCGAAGACCGTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCCCACAGGTCGGTGGG 29101 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 || | |||||||| ||| | || || || |||| || || || ||||||| |||| Sbjct 29102 CTTGACATCCCACATGTCATATTGAAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGA 29161 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTC---GGAGCTCGCCTCGAGGGCTGCGTGATA 116171 | ||| || || ||||||| || | || ||| ||||| ||||| || || || Sbjct 29162 CGAATAAGGACCTTCAACCTTGGCAATCTCCATAGAG---GCCTCAAGGGCAGCATGGTA 29218 Query 116172 CATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG 116231 || |||||||| || | |||| | || ||| || || || | |||| Sbjct 29219 GATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAGCTTCGGGTGATTCGAAGGGAAGAC- 29277 Query 116232 GCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 116290 ||| | || || |||| || || || |||||||| | ||||| || || || | Sbjct 29278 GCAGAGCAAGGAAAGCATCAGCAAGTCCCTGGACACCAACACCAATGGGTCGGTGACGGC 29337 Query 116291 TATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 116350 | || || ||||| || || || || | ||| |||||| | | || || | Sbjct 29338 TGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAGTTCACATCGATGATGCGGTTGAGGT 29397 Query 116351 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 116410 | | || |||||||| | ||| |||||||||| | ||| | | | | | Sbjct 29398 TACGGACAACCACCTTTGTAACTTCGTGAAGCTTTTTAAAGTCATAGCATCCTTCGTTGT 29457 Query 116411 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 116470 | |||| | ||| || || | || |||| || || |||| | |||||| Sbjct 29458 AGTCGACAAAAGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCATCAGGCG 29517 Query 116471 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 ||| |||||| ||||| || || || | || || || ||||| |||| |||||| | Sbjct 29518 CAGAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCT 29577 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 | || ||| ||| || ||||||||||||||| | || | || ||||| || | Sbjct 29578 GGTTGCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCT 29637 Query 116591 GGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCC 116649 ||| || || |||| | ||| | | || | ||| | | ||| | | || ||| Sbjct 29638 GGGCCTCCAGGATAGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCGACCACGTCCC 29696 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCC 116708 |||| ||| ||||| || || ||||| || || || ||| ||| || | || || Sbjct 29697 TCCTTCTCATACTTCTCATACAGAGCCTCGAATTCCTC-GCCATAGCAGTCAGCAAGGCC 29755 Query 116709 TGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCAT 116765 || || || || || || | | || ||| | ||| || ||| || |||||||| Sbjct 29756 AGG-GCATTCATTAGGGCACATCAAAGTCCAAT--CCAAGTTCTTCTCGACGCGCTTCAT 29812 Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825 ||| || || ||||||||||| || ||| || || || || | ||||| | || Sbjct 29813 GAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCC 29872 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 116885 || || || | || | || || | || ||| |||||||| || || ||||| | Sbjct 29873 GTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGAT 29932 Query 116886 CGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 || | | || | |||| ||| |||||| || || || || || ||| Sbjct 29933 GGCAAAGGCACCAGGACGCTTG---TTTCCACCCTGGTCGACGTATCTGGCAGTGTTGTT 29989 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGA 116997 || || |||||||| || |||||||| | || || ||||| || ||| ||| || Sbjct 29990 GAAGACACGAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCCGGCGATATAAGA 30049 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057 | || |||| | || | ||||| || | || ||||| || ||| ||| || || Sbjct 30050 GCCT--GTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCCATCTTGGAAATC 30107 Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117 || || | | | | | ||||||| || || || ||| |||| | | | Sbjct 30108 ATGGCACATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAACC 30167 Query 117118 AGGAAGCAGCTCGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 | |||||| || | || | ||| || |||||||||||||||||||| || | || Sbjct 30168 AAGAAGCATGAGGAGAGCTGAG--CTTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGACG 30225 Query 117176 CGTGGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 | ||| | || | | || |||||| | ||| ||||| | |||| ||||| Sbjct 30226 CATGGGTAAAGAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTT 30283 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGAT 117293 || || ||| || | | || ||||||| ||||| || || || | | | Sbjct 30284 GTCTCCCCAAATGCCAACAGCCACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTT 30343 Query 117294 ACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 ||||| ||| || |||| || ||||| |||||||| Sbjct 30344 GCCATCAAGCTTCAGGAGATATGATCGCTCCAGGGTCTTGA 30384 >seq219 Length=54288 Score = 152 bits (168), Expect = 6e-32 Identities = 350/521 (67%), Gaps = 7/521 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||||||||| |||||||| || || |||||| |||||| Sbjct 42761 AGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 42820 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| | |||||| | |||||| || | ||| | || ||||||||| Sbjct 42821 AGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGAT 42880 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 ||||| ||| || || |||| ||||||| ||||||||| | ||| | | Sbjct 42881 ACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGAT 42940 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||| || ||||||| ||||| || || || |||| |||| || || | || Sbjct 42941 CCACTTGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAA 43000 Query 127759 GAGTTCCTTCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 ||| | | | | || | || |||| ||| | || ||||| || ||||| | Sbjct 43001 GAGGTAGGTGCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCT 43059 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||||| | | ||| || | ||| | ||||||| | || || ||| ||| Sbjct 43060 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 43118 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || ||| | | ||||| ||||| || || || ||||| Sbjct 43119 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCA 43178 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 43179 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 43238 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| | |||||| || ||||| | |||||| || ||||| Sbjct 43239 TCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 43279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496164539240