Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq38 136 9e-27
seq5 136 9e-27
seq287 102 2e-16
>seq38
Length=159530
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| || || |||||||| |||| ||||||||| | || ||||
Sbjct 138715 CGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTC 138656
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| |||||||| ||||||||||| | ||||||||||| ||| ||| ||
Sbjct 138655 CGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCC 138596
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| |||||| |||| |||||| | | || || || |
Sbjct 138595 TCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 138536
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || || || |||||
Sbjct 138535 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 138498
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||||||||| |||||||| |||| ||||||||| | || ||||| || ||
Sbjct 138991 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCC 138932
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||||||||||||||||||||| ||| || || || |||
Sbjct 138931 TCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 138872
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||| || | || || || || | ||||| |||
Sbjct 138871 TGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTC 138812
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || || || ||||| ||
Sbjct 138811 TTGCCGGTCAGGGTTTTGAC 138792
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497
|||||| |||| ||||||||| || || | || |||||||||||||| || || ||
Sbjct 139199 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAA 139140
Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557
||| |||||||||||||| || ||| || || ||||| |||||| || ||
Sbjct 139139 GATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGATTTGACATT 139080
Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
|||| ||| || | || || || |||| ||||| ||||| || || | ||| || ||
Sbjct 139079 GTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGAC 139020
Query 199618 AAAAATTTG 199626
|| || ||
Sbjct 139019 GAAGATCTG 139011
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||||||||| |||||| | |||||||| ||||| || |||| |||||| |||||||
Sbjct 138624 ATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACTACAACATCCAGAAG 138683
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
||||| || |||||| | ||| | | |||||
Sbjct 138684 GAGTCCACCCTTCACTTGGTTCTCCGCCTTCG 138715
>seq5
Length=314554
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| |||||||| || |||||||| |||| ||||||||| || ||
Sbjct 52329 CGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 52388
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || |||||||| | |||||||||||||| ||| ||
Sbjct 52389 CGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCC 52448
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| |||||| | | || || || |
Sbjct 52449 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 52508
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| |||||||| || || || ||||| ||
Sbjct 52509 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 52546
>seq287
Length=39990
Score = 102 bits (112), Expect = 2e-16
Identities = 134/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||||| || || | ||||| || |||||||| || |||||||
Sbjct 4475 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 4534
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | |||||||| ||||| |||||| || ||||| ||||| ||| || |
Sbjct 4535 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4594
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | || || || | ||||| ||||| ||||| || || ||||| |
Sbjct 4595 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4654
Query 199620 AAATTT 199625
|| |||
Sbjct 4655 AACTTT 4660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178899864001413
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |