Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq38 149 7e-31
seq5 131 2e-25
seq287 116 4e-21
>seq38
Length=159530
Score = 149 bits (164), Expect = 7e-31
Identities = 148/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || ||||||||||||||||||||
Sbjct 138686 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAA 138627
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || |||||||||| |||||| ||| | |
Sbjct 138626 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 138567
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | |||||||| ||||| || || || || ||
Sbjct 138566 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 138507
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 138506 GAAGATTTGCAT 138495
Score = 113 bits (124), Expect = 5e-20
Identities = 135/181 (75%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || |||| || |||||||| || |||||
Sbjct 138971 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAA 138912
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | | |||||||||| |||||| ||||| |||
Sbjct 138911 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 138853
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || ||| || || || || | |||||||| ||||| ||||| ||||| |
Sbjct 138852 TGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGA 138793
Query 46581 C 46581
|
Sbjct 138792 C 138792
Score = 89.7 bits (98), Expect = 6e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|| |||||||| ||||| ||||||||| || || || |||| || |||||||| ||
Sbjct 139204 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGCTGCTTACCA 139145
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
|| || || | ||||||||||| | || | | |||||||||| |||||| |||
Sbjct 139144 GCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGATTTG 139085
Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
| | | | || || || ||||| |||| ||||| || ||||| || | ||
Sbjct 139084 ACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTC 139025
Query 46577 TTAACAAAGATTTGCAT 46593
|| || ||||| |||||
Sbjct 139024 TTGACGAAGATCTGCAT 139008
>seq5
Length=314554
Score = 131 bits (144), Expect = 2e-25
Identities = 163/221 (74%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | ||| |||||| ||||| ||||||||| || ||||| |
Sbjct 52335 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 52394
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| || ||||| ||||| ||||||||||| | || | || |||||||
Sbjct 52395 TCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 52454
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| ||||| ||| | | | |||||| || ||||| || | |||||
Sbjct 52455 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 52513
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|| || ||||| || || || || || || ||||| ||||
Sbjct 52514 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 52554
>seq287
Length=39990
Score = 116 bits (128), Expect = 4e-21
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| |||||||| || || || || | || |||||||||||||| ||||| |
Sbjct 4475 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 4534
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| |||||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 4535 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4594
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 4595 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4654
Query 46584 AGATTT--GCATT 46594
| ||| |||||
Sbjct 4655 AACTTTTCGCATT 4667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565228232774280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |