Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq38 149 7e-31 seq5 131 2e-25 seq287 116 4e-21 >seq38 Length=159530 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || |||||||||||||||||||| Sbjct 138686 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAA 138627 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 138626 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 138567 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | |||||||| ||||| || || || || || Sbjct 138566 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 138507 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 138506 GAAGATTTGCAT 138495 Score = 113 bits (124), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| || |||||||| || ||||| Sbjct 138971 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAA 138912 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 138911 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 138853 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| || || || || | |||||||| ||||| ||||| ||||| | Sbjct 138852 TGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGA 138793 Query 46581 C 46581 | Sbjct 138792 C 138792 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| ||||||||| || || || |||| || |||||||| || Sbjct 139204 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGCTGCTTACCA 139145 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | ||||||||||| | || | | |||||||||| |||||| ||| Sbjct 139144 GCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGATTTG 139085 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | || || || ||||| |||| ||||| || ||||| || | || Sbjct 139084 ACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTC 139025 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 139024 TTGACGAAGATCTGCAT 139008 >seq5 Length=314554 Score = 131 bits (144), Expect = 2e-25 Identities = 163/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | ||| |||||| ||||| ||||||||| || ||||| | Sbjct 52335 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 52394 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || ||||| ||||| ||||||||||| | || | || ||||||| Sbjct 52395 TCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 52454 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 52455 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 52513 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || || || || || || ||||| |||| Sbjct 52514 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 52554 >seq287 Length=39990 Score = 116 bits (128), Expect = 4e-21 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || || || | || |||||||||||||| ||||| | Sbjct 4475 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 4534 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 4535 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4594 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 4595 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4654 Query 46584 AGATTT--GCATT 46594 | ||| ||||| Sbjct 4655 AACTTTTCGCATT 4667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565228232774280