Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq219 242 4e-59 seq5 122 9e-23 seq38 118 1e-21 seq287 104 2e-17 >seq219 Length=54288 Score = 242 bits (268), Expect = 4e-59 Identities = 579/861 (67%), Gaps = 21/861 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || ||||| || || || || || || | Sbjct 42455 CATGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 42514 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 || |||||| | |||||| || |||||||||| | |||||| ||| | | || Sbjct 42515 CAGAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCC 42574 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || |||| ||||| | ||||| || ||||| ||||| ||| ||| | || || Sbjct 42575 GAG-AG--CGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGC 42631 Query 132767 AATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | | | ||||| ||| |||| || || || || || | || |||||||| | Sbjct 42632 GTTCATG-CCCAGAAGAGCGCAAGGG-AGAGCCTCAGTCAAGAACTCCTGCTCGATTCTG 42689 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || || || |||| ||| || | | | || ||| | || | | || || | Sbjct 42690 ACGGCATCAGTGATGATGTCACGGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAG 42749 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 | || |||||||||||| |||| |||||||| | || ||||| |||||| | Sbjct 42750 TGGAGCAGGCAAGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 42809 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||| || |||||||| || | || |||||||| || |||| ||| || || Sbjct 42810 AAGGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCG 42869 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTC 133064 ||||||| ||||| || || || || || || || |||| | | || | | ||| Sbjct 42870 CTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTC 42929 Query 133065 TT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || | |||| ||||| | ||||| |||||||| | | ||| || || || | Sbjct 42930 TTGTCCTGG--ATCCACTTGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCT 42987 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAG 133181 | || ||||| || | | || | | || | | | ||||||||||||||||| Sbjct 42988 CAATAGCGTTGAAGAG--GTAGGTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAG 43045 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 || || | || ||||| | ||||||||| ||| || || ||||| ||||| || Sbjct 43046 CAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCG 43105 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 |||||| | ||| || || ||||||||||||||| || |||||||| ||||| Sbjct 43106 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 43165 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 ||| ||| || || |||||||| | ||| |||||| | ||||| ||||||| Sbjct 43166 GTCCGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 43225 Query 133362 GCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 ||| | ||||||| || ||||||||||| || | ||||||| ||||||| || || Sbjct 43226 GCGGTTGTTCCAGTCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGA 43285 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 ||||| || || |||||||| Sbjct 43286 AGCCTCAGCCTTCTTGTACAT 43306 >seq5 Length=314554 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 52552 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 52493 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 52492 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 52434 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | ||| || || ||||| || || | |||||||| | |||||| Sbjct 52433 CCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 52374 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| ||||| Sbjct 52373 CAACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCG 52335 >seq38 Length=159530 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| |||| || ||| | || Sbjct 138495 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 138554 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| ||||| | ||||| Sbjct 138555 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 138614 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || || | || || || |||||||||| Sbjct 138615 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACTACAAC 138674 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || ||||| || || Sbjct 138675 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCG 138709 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | || || ||| | | Sbjct 139008 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACAATCACACTGGAGGTGGAGTCATCT 139067 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| ||| |||| ||||| ||||| |||||| | ||||| Sbjct 139068 GATACCATCGACAATGTCAAATCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 139127 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| |||| || ||||| | |||||||||| Sbjct 139128 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACTACAAC 139187 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| ||||| ||| || || || ||||| || ||| || | || |||| Sbjct 139188 ATCCAGAAGGAGAGC-ACCCTTCACTTGGTTCTCCGTCTGCGTGGTGGCC 139236 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| ||||| || || ||||| |||||||| | || |||||| | |||| | | Sbjct 138787 TAGTCGTCAAAACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCCGATACCA 138846 Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | |||| | || || |||| ||||| ||||| || || | ||||| ||||| Sbjct 138847 TCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGT 138905 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 ||||| | ||| || || ||||| || |||| || || || ||||||||||||||| Sbjct 138906 CTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGGACTCTGTCCGACTACAACATCCAG 138965 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| | || || || ||||| || ||| || | || || Sbjct 138966 AAGGAGTCTACTCTCCACTTGGTCCTTCGTCTGCGTGGTGG 139006 >seq287 Length=39990 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || ||||| || | ||||| || || || |||||||| ||||||||| | || |||||| Sbjct 4670 AACAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAG 4611 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 || |||||| | | | | || || |||| ||||| |||||||||||| | Sbjct 4610 TCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCG 4551 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || || ||||| | || | ||| ||||| ||||| || || | || ||||| ||| Sbjct 4550 GATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGAC 4491 Query 38418 TACAACATCCAAAAGGAAGCGACGCT 38443 ||||||||||| |||| ||| |||| Sbjct 4490 TACAACATCCAGAAGG-TGCGTCGCT 4466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163803141760