Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq219 242 4e-59
seq5 122 9e-23
seq38 118 1e-21
seq287 104 2e-17
>seq219
Length=54288
Score = 242 bits (268), Expect = 4e-59
Identities = 579/861 (67%), Gaps = 21/861 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || ||||| || ||||| || || || || || || |
Sbjct 42455 CATGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 42514
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707
|| |||||| | |||||| || |||||||||| | |||||| ||| | | ||
Sbjct 42515 CAGAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCC 42574
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766
|| || |||| ||||| | ||||| || ||||| ||||| ||| ||| | || ||
Sbjct 42575 GAG-AG--CGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGC 42631
Query 132767 AATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825
| | | ||||| ||| |||| || || || || || | || |||||||| |
Sbjct 42632 GTTCATG-CCCAGAAGAGCGCAAGGG-AGAGCCTCAGTCAAGAACTCCTGCTCGATTCTG 42689
Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885
|| || || |||| ||| || | | | || ||| | || | | || || |
Sbjct 42690 ACGGCATCAGTGATGATGTCACGGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAG 42749
Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945
| || |||||||||||| |||| |||||||| | || ||||| |||||| |
Sbjct 42750 TGGAGCAGGCAAGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 42809
Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005
|| |||| || |||||||| || | || |||||||| || |||| ||| || ||
Sbjct 42810 AAGGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCG 42869
Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTC 133064
||||||| ||||| || || || || || || || |||| | | || | | |||
Sbjct 42870 CTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTC 42929
Query 133065 TT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123
|| | |||| ||||| | ||||| |||||||| | | ||| || || || |
Sbjct 42930 TTGTCCTGG--ATCCACTTGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCT 42987
Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAG 133181
| || ||||| || | | || | | || | | | |||||||||||||||||
Sbjct 42988 CAATAGCGTTGAAGAG--GTAGGTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAG 43045
Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241
|| || | || ||||| | ||||||||| ||| || || ||||| ||||| ||
Sbjct 43046 CAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCG 43105
Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301
|||||| | ||| || || ||||||||||||||| || |||||||| |||||
Sbjct 43106 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 43165
Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361
||| ||| || || |||||||| | ||| |||||| | ||||| |||||||
Sbjct 43166 GTCCGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 43225
Query 133362 GCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418
||| | ||||||| || ||||||||||| || | ||||||| ||||||| || ||
Sbjct 43226 GCGGTTGTTCCAGTCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGA 43285
Query 133419 CGCCTCGGCTTTTTTGTACAT 133439
||||| || || ||||||||
Sbjct 43286 AGCCTCAGCCTTCTTGTACAT 43306
>seq5
Length=314554
Score = 122 bits (134), Expect = 9e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 52552 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 52493
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| |||||| | ||
Sbjct 52492 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 52434
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| | || | ||| || || ||||| || || | |||||||| | ||||||
Sbjct 52433 CCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 52374
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| | || || || |||| |||||
Sbjct 52373 CAACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCG 52335
>seq38
Length=159530
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| ||||||||| |||| || ||| | ||
Sbjct 138495 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 138554
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| ||||| | |||||
Sbjct 138555 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 138614
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| ||||| || || | || || || ||||||||||
Sbjct 138615 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACTACAAC 138674
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || ||||| || ||
Sbjct 138675 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCG 138709
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| || ||||| | || || ||| | |
Sbjct 139008 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACAATCACACTGGAGGTGGAGTCATCT 139067
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | ||| ||| |||| ||||| ||||| |||||| | |||||
Sbjct 139068 GATACCATCGACAATGTCAAATCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 139127
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || |||||||| |||| || ||||| | ||||||||||
Sbjct 139128 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACTACAAC 139187
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||| ||||| ||| || || || ||||| || ||| || | || ||||
Sbjct 139188 ATCCAGAAGGAGAGC-ACCCTTCACTTGGTTCTCCGTCTGCGTGGTGGCC 139236
Score = 107 bits (118), Expect = 2e-18
Identities = 158/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| ||||| || || ||||| |||||||| | || |||||| | |||| | |
Sbjct 138787 TAGTCGTCAAAACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCCGATACCA 138846
Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | |||| | || || |||| ||||| ||||| || || | ||||| |||||
Sbjct 138847 TCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGT 138905
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
||||| | ||| || || ||||| || |||| || || || |||||||||||||||
Sbjct 138906 CTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGGACTCTGTCCGACTACAACATCCAG 138965
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| | || || || ||||| || ||| || | || ||
Sbjct 138966 AAGGAGTCTACTCTCCACTTGGTCCTTCGTCTGCGTGGTGG 139006
>seq287
Length=39990
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 38240 AAAAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297
|| ||||| || | ||||| || || || |||||||| ||||||||| | || ||||||
Sbjct 4670 AACAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAG 4611
Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357
|| |||||| | | | | || || |||| ||||| |||||||||||| |
Sbjct 4610 TCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCG 4551
Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417
|| || ||||| | || | ||| ||||| ||||| || || | || ||||| |||
Sbjct 4550 GATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGAC 4491
Query 38418 TACAACATCCAAAAGGAAGCGACGCT 38443
||||||||||| |||| ||| ||||
Sbjct 4490 TACAACATCCAGAAGG-TGCGTCGCT 4466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500163803141760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |