Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq54 214 2e-50 seq135 84.2 3e-11 >seq54 Length=139347 Score = 214 bits (236), Expect = 2e-50 Identities = 461/688 (67%), Gaps = 6/688 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 63108 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 63049 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 63048 TCCTCAATGGTCAGGAGAGAAACATCGAAAGTACCACCACCAAGATCGAAGATGAGGACG 62989 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 62988 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTGGGCTCG 62929 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 62928 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGC 62869 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | || || Sbjct 62868 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGCCGCCCAGG 62809 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || | ||| || || ||||| || | | Sbjct 62808 TAGGCCTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 62749 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || || || || | | ||| || | || | | Sbjct 62748 AAGGTCTTGGTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT---GGAGGCCTTGTCG 62692 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| | | | | |||||||| | || |||| ||| | ||||| | Sbjct 62691 ACGATCTTGAAGGGGAAGTGCTTCATATCAGCCTGAACCTCGGCGTCGGCGAACTTGCGA 62632 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 62631 CCAATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTG 62572 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || || ||| |||| ||||||||| Sbjct 62571 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGTT 62515 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| ||||| || || ||||| | | ||| |||||||| Sbjct 62514 CGGTTACCCTGGTCGTTGGCAATGATATCACACCGGTCCTCACGGAAGATACCGACGCAA 62455 Query 8117 GAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 62454 GAGTACGTAGTACCCAGGTCGATACCGA 62427 >seq135 Length=88816 Score = 84.2 bits (92), Expect = 3e-11 Identities = 331/519 (64%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 || ||||| |||||||||| ||| || ||||| | || || ||||| || | Sbjct 29799 TCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGG 29858 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 ||||||| | || || ||| || | || || || || | | |||||||||||| Sbjct 29859 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAA 29918 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | |||| |||| || | | | ||||| || | || | ||| ||| Sbjct 29919 GGCTCGAGGTAGATGGCAA-AGGCAC--CAGGACGCTTGTTTCCACCCTGGTCGACGTAT 29975 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 || || || ||| | || || | ||| || || ||||| | ||| || || ||||| Sbjct 29976 CTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTG 30035 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 || |||| || | ||||| | | ||| |||| | || ||||| |||||| Sbjct 30036 CCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCC 30095 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| || ||||| || | |||||||| ||||| || || || || ||| Sbjct 30096 ATCTTGGAAATCATGGCACATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCC 30155 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972 || | ||| || ||| || || || | || | | || |||||||| ||||| || Sbjct 30156 TTCATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGG 30215 Query 105973 GTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGA 106032 || || | ||||| | || || | || | | |||||| || ||||| | Sbjct 30216 GTGGGGGACGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGC 30275 Query 106033 TCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071 ||||| | || ||| ||| |||| ||| || |||||| Sbjct 30276 TCAATGTTGTCTCCCCAAATGCCAACAGCCACTCGCATA 30314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635121375548760