Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq135 210 3e-49 seq219 98.7 1e-15 >seq135 Length=88816 Score = 210 bits (232), Expect = 3e-49 Identities = 1076/1696 (63%), Gaps = 61/1696 (4%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || ||||||||| |||||| | | |||||| | Sbjct 28605 CGCAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAATGCATGCTGGTA 28664 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| ||| || ||| | ||||| ||||| |||||||| ||||| Sbjct 28665 ATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGATCAATGAAA 28724 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||| || || | ||| | || || ||| ||| ||||| ||||||||| Sbjct 28725 GCACCACGGTCGGCTGACATCTGGACAATTTGACGTTGAGAAATCTCCCAAACAGTCTTG 28784 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC---CAGCC 109644 |||| |||||| || ||||||||| ||||| || |||||||| |||| Sbjct 28785 TACAGGGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGGATAGAGCCGTTCTCAGCA 28844 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACA 109704 | | || | | |||||| | | ||||| || ||| | ||||| | | | Sbjct 28845 ATGA---TGCGGTTCTTCATAGCATCGGACCAAAGGCCGGTATCGACAAGATCCTTGAGA 28901 Query 109705 AGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTC 109764 || |||||| || || || |||||||| ||||| |||||||||| | Sbjct 28902 AGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAG 28961 Query 109765 GTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATG 109824 |||||||| || |||||||| ||||| || | ||| || | |||| || |||||||| Sbjct 28962 GTGTAGGGCTCAAAACACTCGTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATA 29021 Query 109825 GGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCC 109884 || || | ||| | ||||| || ||||| | | ||| | |||| | | ||| Sbjct 29022 GGGGCGACGAGCAAGCTGTTGCGAAGACCGTGCTCCTTAATTTGCTCCTTGAGCGAATCC 29081 Query 109885 CAATCATAACGACCACTAAATT--TAGTCTCACCATCCCACATATCTGGTTGAAGTACAC 109942 || || |||| | | | | || |||||||||| || |||||| | | Sbjct 29082 CACTC-------CCAC-AGGTCGGTGGGCTTGACATCCCACATGTCATATTGAAGAATGC 29133 Query 109943 CCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGG 110002 | |||| || || || |||||||| | || | || ||||||| ||| | ||| Sbjct 29134 CTTCAGAGGCGGGTGATCCCTTGAATGACGAATAAGGACCTTCAACCTTGGCAATCTCCA 29193 Query 110003 ATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAG 110062 || ||||| || || ||||| || || |||||||| || || |||| |||| Sbjct 29194 TAGAGGCCTCAAGGGCAGCATGGTAGATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAG 29253 Query 110063 ACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAGACCCTGAACA 110121 || | ||||||||||||| || || || || |||| || || ||||| ||| Sbjct 29254 CTTCGGGTGATTCGAAGGGAAGACG-CAGAGCAAGGAAAGCATCAGCAAGTCCCTGGACA 29312 Query 110122 CCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAG 110181 || | ||||||||| || || |||| | ||||| | || ||||| || Sbjct 29313 CCAACACCAATGGGTCGGTGACGGCTGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAG 29372 Query 110182 TTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT- 110240 || ||||||| || ||||| || || ||| || | ||| || || || Sbjct 29373 TTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTTGTAACTTCGTGAAGCTTT 29432 Query 110241 -----GTCGTA--ATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAG 110293 ||| || ||| |||| | ||| |||| | |||||||| | || Sbjct 29433 TTAAAGTCATAGCATCCTTCGTTGTAGTC--------GACAAAAGCAGGGAGAGCCAAAG 29484 Query 110294 ACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACA 110353 | || | ||||| |||| ||| || | | ||| || | ||| || || || | Sbjct 29485 AGGCCAAGTTGCAGACAGCGACCTCATCAGGCGCAGAGTACTCAATAATCTCAGTGCAGA 29544 Query 110354 AGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCT 110413 |||||| || ||| |||| ||||||||| || ||| |||||| ||||| Sbjct 29545 GGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTATCCT 29604 Query 110414 TATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CA 110472 | ||||||||| | ||| ||||||| || ||||| | || || || | | ||| | | Sbjct 29605 TGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCACAGCT 29664 Query 110473 TCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530 || | | | ||| ||| |||| | | | || |||| ||| ||||| |||| Sbjct 29665 TCTGAG-CTCGGATAGTCTTGCG--ACCACGTCCCTCCTTCTCATACTTCTCATACAGAG 29721 Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGG 110589 |||| ||||||| || || |||| ||| || || || | || || | | Sbjct 29722 CCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGG-GCATTCATTAGGGCACATCAAA 29780 Query 110590 GACCAATTTCCACCCTC--CTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | ||||| ||| || ||| || | |||||||||||| ||||| ||||| | || Sbjct 29781 GTCCAAT--CCAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGA 29838 Query 110648 AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGT 110707 ||| ||||||||| ||| ||||||| | || ||||| ||| || || | || | Sbjct 29839 GGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACT 29898 Query 110708 CCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG----- 110762 | | || ||| | |||||| || ||||| |||| || | || || | |||| Sbjct 29899 CAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGT 29955 Query 110763 -ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 || |||||| || || | || ||| |||||||| | ||||| || || || | Sbjct 29956 TTCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATAC 30015 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 | | ||| ||| ||||| || || || ||||||| || ||||| | Sbjct 30016 CGTTGGAGGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGACGT 30075 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAA 110940 | || |||||||| ||| ||| ||| ||||| ||| | | ||| | || Sbjct 30076 TGAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCT-TCAAAGTATCGTAG 30134 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000 ||||| ||||| || |||| || ||| | ||||| || || | ||||| | Sbjct 30135 ATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGC 30194 Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCT 111058 || || || || |||||||| || || | |||||| | | ||| ||| |||||| Sbjct 30195 GGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATG--GGTAAAGAATTTGCTGGACATGA 30252 Query 111059 TGTTGTATGTGTCGAG 111074 || |||||| || || Sbjct 30253 GGTGGTATGTCTCAAG 30268 >seq219 Length=54288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || |||||||||||||| || |||| || ||||||||||| ||| Sbjct 42774 TGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCT 42833 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 || ||||| ||||| ||||||| ||| ||| |||||||| ||||| ||| Sbjct 42834 CTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGCA 42893 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683 || || || | ||||||| || ||||| ||| |||||| || |||||||| || Sbjct 42894 GCAAAGGCAACGAGACGCTGGGC-AAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 42952 Query 119684 CCAGTTGGCCTT 119695 ||| | |||||| Sbjct 42953 CCACTCGGCCTT 42964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588965405794200