Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq135 242 4e-59 seq18 109 6e-19 seq219 98.7 1e-15 >seq135 Length=88816 Score = 242 bits (268), Expect = 4e-59 Identities = 969/1501 (65%), Gaps = 57/1501 (4%) Strand=Plus/Plus Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 ||| | | ||||||| | | ||||||||| || | | ||||| |||| || Sbjct 28848 ATGCGGTTCTTCATAGCATCGGACCAAAGGCCGGTATCGACAAGATCCTTGAGAAGCCAG 28907 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||||||| | ||||| || || ||| | || | | |||||||| | |||||| Sbjct 28908 GGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAG 28967 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || ||||| || || || ||||||||||| || | ||| ||| || ||||| || || Sbjct 28968 GGCTCAAAACACTCGTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCG 29027 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC- 106071 | | | ||||| |||||||| | ||||| || | |||||||| |||||| || Sbjct 29028 ACGAGCAAGCTGTTGCGAAGACCGTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCC 29087 Query 106072 -----GTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGAC 106126 || | || ||||| | |||||||| ||| ||||||| | |||| || Sbjct 29088 CACAGGTCGGTGGGCTTG------ACATCCCACATGTCATATTGAAGAATGCCTTCAGAG 29141 Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA-ATTCACAGCTCGC 106185 | ||| || |||| |||| | ||| | ||||| | | || | | || || || Sbjct 29142 GCGGGTGATCCCTTGAATGACGAATAAGGACCTTCAACCTTGGCAATCTCCATAG-AGGC 29200 Query 106186 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 106245 ||| |||| || || || ||||| |||||||| | |||| ||| ||||| Sbjct 29201 CTCAAGGGCAGCATGGTAGATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAGCTTCGGG 29260 Query 106246 TGAATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAAC 106304 ||| || || | | || ||| | || || |||| || || || || ||||| | || Sbjct 29261 TGATTCGAA-GGGAAGACGCAGAGCAAGGAAAGCATCAGCAAGTCCCTGGACACCAACAC 29319 Query 106305 CAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGT 106364 |||| |||| ||| || | || || || || || ||| || || | || | Sbjct 29320 CAATGGGTCGGTGACGGCTGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAGTTCACAT 29379 Query 106365 CAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT 106424 | |||| ||||| || || | ||| | |||||| | ||| ||||| |||| | | | Sbjct 29380 CGATGATGCGGTTGAGGTTACGGACAACCACCTTTGTAACTTCGTGAAGCTTTTTAAAGT 29439 Query 106425 CAAAAGTGCGAGTCTCTTCATT------GACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 || | | || |||| || |||| | || || || | || ||||| | Sbjct 29440 CATA-----GCATC-CTTCGTTGTAGTCGACAAAAGCAGGGAGAGCCAAAGAGGCCAAGT 29493 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 |||| ||||| |||||| | | |||||| | ||| || || || | |||||| | Sbjct 29494 TGCAGACAGCGACCTCATCAGGCGCAGAGTACTCAATAATCTCAGTGCAGAGGTTGGAGC 29553 Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598 | || || |||| ||||| ||||| ||||| |||||| |||||||||||||| Sbjct 29554 TGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTATCCTTGTAGAGCA 29613 Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657 || |||| | || ||||| ||||| | || || || | | ||||| | || | ||| Sbjct 29614 TGAAGGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCACAGCTTCTG-AGCT 29672 Query 106658 GGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 106717 | | | | | | ||||||||| ||| ||||| || || || || || ||| Sbjct 29673 CGGATAGTCTTGCGACCACGTCCCTCCTTCTCATACTTCTCATACAGAGCCTCGAATTCC 29732 Query 106718 TCACCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGAC 106775 || ||| || ||| | || || || || || | || || | | || ||| | | Sbjct 29733 TC-GCCATAGCAGTCAGCAAGGCCAGG-GCATTCATTAGGGCACATCAAAGTCCAAT--C 29788 Query 106776 CA--CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 106833 || || ||| || ||||||||||| || || || ||||| || | || || || Sbjct 29789 CAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTC 29848 Query 106834 TC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 106892 | ||| || ||||||| | || ||||| || | ||||||||||| | || || Sbjct 29849 ACGGGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACAT 29907 Query 106893 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTT 106946 | |||||||| ||||| || |||| || | | || ||||| ||| | | Sbjct 29908 CGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTTCCACCCT 29964 Query 106947 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 107006 | | || || | || ||| ||| || || |||||||| || || ||||| | || Sbjct 29965 GGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGAGG 30024 Query 107007 GACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 107064 ||| ||||| || ||| ||| ||| | |||| | | | |||| || | || Sbjct 30025 TACCGTTTGTGCCGGCGATATAAGAGCCT--GTGGCACGGATACGGTGGACGTTGAGGCC 30082 Query 107065 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 107124 ||||| |||||| ||| || || ||||| | | | ||| | |||||||| | Sbjct 30083 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTATCGTAGATACCCTC 30142 Query 107125 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 107184 || ||| ||||| || | | | |||||| ||| | ||| | | || ||||| Sbjct 30143 AATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGCGGGGTACC 30202 Query 107185 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTAT 107242 ||| ||||||||||| || | || || | || | | || |||||| || |||| Sbjct 30203 AGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCT--GGACATGAGGTGGTAT 30260 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | |||| ||||||| || || ||||| | ||||| ||||||| |||| Sbjct 30261 GTCTCAAGGACACGCTCAATGTTGTCTCCCCAAATGCCAACAGCCACTCGCATAATCATG 30320 Query 107303 T 107303 | Sbjct 30321 T 30321 >seq18 Length=239243 Score = 109 bits (120), Expect = 6e-19 Identities = 277/414 (67%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||||||||| || ||||| | || || | || ||||| ||| | ||||| || |||| Sbjct 111133 ATCAAAGCGGCCAGGACGCATCAGGGCCTTGTCCAGGATGTCAGCACGATTGGTACCGGC 111192 Query 9254 GATGACAACAATACCTGTT-TC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | |||||| | |||||| || | | | || || ||||| ||||| | || |||||| Sbjct 111193 CAAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTGAGAATCTGGTTA 111250 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCC--CA 9369 | || ||| ||||| ||||| | | |||| | | || || || || || Sbjct 111251 AGGGTAGCTTCGCGTTCGTCATTTCCACCGAATCCACGACCGCT---TTCCTGTCGAGCA 111307 Query 9370 CGGC-------ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422 |||| ||| || || |||||||||| || || || ||| | || | Sbjct 111308 CGGCCGATAGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCATTCTTTCGACCTTCG 111367 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482 |||| || || || || | | ||||| ||||| ||||||||||| || | | Sbjct 111368 GCAAACAGGTCTCGTACTCGAGACGGACCCACGCCAACGAACATCTCCACGAACTCAGAA 111427 Query 9483 GCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 || || || | ||| ||||| ||| || || ||| |||| |||||||||||| Sbjct 111428 CCGCTCACGCTGAA-GAATGGGACGCCAGACTCTCCAGCAGTGGCCTTGGCGAGAAGAGT 111486 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||| ||||| ||||| || | ||||| |||||| || |||||||||||||| Sbjct 111487 CTTTCCCGTTCCTGGGGGGCCGGAGAGGATGGCACCTCGAGGAATCTTGGCGCC 111540 >seq219 Length=54288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 342/524 (65%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || || || || || || |||||| || || Sbjct 42762 GCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 42821 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 42822 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 42881 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---A 117450 ||||| ||| ||||| |||| || |||| ||| ||||| ||| || |||| Sbjct 42882 CCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGA---AGAGTTCTTGTCCTGG 42938 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 117510 | ||| || || ||||| | |||||||| ||| || || | ||| | || || | Sbjct 42939 ATCCACTTGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTG 42998 Query 117511 AATAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 117569 || | | | | | | | | ||||| | ||| |||| || | || ||||| Sbjct 42999 AAGAGGTAGGTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGT 43057 Query 117570 TTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 117628 ||| || | | | ||| ||| | || | ||||||| | || || ||| | Sbjct 43058 CTCGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGA 43116 Query 117629 TCTGCACTTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 117687 |||| || || |||| ||| | | ||||| ||||| || || || || Sbjct 43117 TCTGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCA 43175 Query 117688 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 117744 |||||||| |||||||||| ||||| | ||| || | || |||| || | ||| Sbjct 43176 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 43235 Query 117745 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 ||||||| | ||| ||||||| ||||| || || || ||||| Sbjct 43236 CAGTCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 43279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970187720360