Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq135 86.0 7e-12
>seq135
Length=88816
Score = 86.0 bits (94), Expect = 7e-12
Identities = 214/325 (66%), Gaps = 0/325 (0%)
Strand=Plus/Plus
Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184
||| ||||| || ||||| | | | | ||||| ||||||||||| |||||||| |
Sbjct 29723 CTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCATTAGGGCACATCAAAGT 29782
Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244
||||||| | || | || | |||| || | ||| || ||||| ||||| | ||
Sbjct 29783 CCAATCCAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAA 29842
Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304
| || | | | | ||||| ||||| ||| | || ||||| || || |
Sbjct 29843 CAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAA 29902
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
| ||| || ||||| || || | || || || | |||| || || || || || ||
Sbjct 29903 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTTCCACC 29962
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
|| || | ||||||||||| ||||| | || | | ||| |||| ||||| || ||
Sbjct 29963 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGA 30022
Query 48425 TATACCATTGGTTCCCGAAATATAA 48449
|||| || || || | ||||||
Sbjct 30023 GGTACCGTTTGTGCCGGCGATATAA 30047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562098689067960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |