Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq135 86.0 7e-12 >seq135 Length=88816 Score = 86.0 bits (94), Expect = 7e-12 Identities = 214/325 (66%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| ||||| || ||||| | | | | ||||| ||||||||||| |||||||| | Sbjct 29723 CTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCATTAGGGCACATCAAAGT 29782 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||||||| | || | || | |||| || | ||| || ||||| ||||| | || Sbjct 29783 CCAATCCAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAA 29842 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | | | | ||||| ||||| ||| | || ||||| || || | Sbjct 29843 CAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAA 29902 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| || ||||| || || | || || || | |||| || || || || || || Sbjct 29903 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTTCCACC 29962 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | || | | ||| |||| ||||| || || Sbjct 29963 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGA 30022 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 |||| || || || | |||||| Sbjct 30023 GGTACCGTTTGTGCCGGCGATATAA 30047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098689067960