Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq56 116 3e-21 >seq56 Length=137465 Score = 116 bits (128), Expect = 3e-21 Identities = 257/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||||| |||||||| |||| | ||| | Sbjct 86625 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTTTTGGGTTCCATGCGCTGAGGATCA 86684 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 | | | || | |||||||| | || || | | | |||||| || || | Sbjct 86685 TTCTGCGATCATAGGGGTTGTTGCGGAGCTTGTGGATGATCTCGGCCAGCTGGTCGACGC 86744 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 || | || | ||| |||||| | ||| || || || || || |||| |||||||| Sbjct 86745 CCTTGCCGGCGTAATCTGCCTTTGCGTCGACATAGTCGGCGCCAAAGTGCCGCCACTGGA 86804 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAA 30246 | ||||| || || || ||||| || | || | |||| || |||| | |||| | Sbjct 86805 AGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGCGTGA-GCCCGACGCTGTCAAGG 86863 Query 30247 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30306 || || | ||| |||||| ||||||||||||| || || ||| ||| | ||||| Sbjct 86864 AACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGCGGTGGAG 86923 Query 30307 TTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30365 ||| ||||| || |||||| |||||||| | | |||||| ||||| | Sbjct 86924 GAGGTGTTGCCCTC-GATGAACCAGAGCAGCTCGGCGATGACGGCGCGGAGGAAGACTCG 86982 Query 30366 CTTGGTCGTGAGGAGGGGAA 30385 |||||| ||||||||||||| Sbjct 86983 CTTGGTGGTGAGGAGGGGAA 87002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408610433741147