Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq38 105 5e-18 >seq38 Length=159530 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||| || || || || ||||| ||| | || | | Sbjct 139223 ACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACC 139164 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| |||||||| ||||| || | |||||| || || || ||||| || || || Sbjct 139163 GTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTT 139104 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || ||| ||| ||| | || | || ||||| | ||||| || || |||| Sbjct 139103 GTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGAT 139044 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||||||||| || || || |||||||| Sbjct 139043 TGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271450143723