Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq38 111 1e-19 >seq38 Length=159530 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || |||||||| || || || ||||| || || | ||| |||| ||| Sbjct 139216 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCC 139157 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| ||||| || || ||||| || || | ||||| ||||||||||| Sbjct 139156 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 139097 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | | || || | ||||||||||| || || || || Sbjct 139096 ATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTG 139037 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || || || |||||||| Sbjct 139036 CCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930919187797