Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq219 248 2e-60 seq135 219 8e-52 >seq219 Length=54288 Score = 248 bits (274), Expect = 2e-60 Identities = 570/857 (67%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||||||||| |||||||||||| Sbjct 43315 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 43256 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 43255 TCCAAGGATTTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 43197 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||| || || || || |||||||| ||| |||| | Sbjct 43196 TCACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 43137 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || ||||||||||||||||| || Sbjct 43136 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 43077 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || | ||| | || ||| | | || | Sbjct 43076 GGAGAACATCCACTCCGAGACATACTCTCTGCTCATCGACACCTACGTCAAGGAGCACAG 43017 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || | || || || || ||| || || |||| | |||||| Sbjct 43016 CCAGCGCACCTACCTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGCCGA 42957 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||||||| ||||||||| | | ||| | || | |||| | |||| || || ||||| Sbjct 42956 GTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTGCCTT 42897 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||||||||| ||||| ||||| |||||||| | ||||| ||||||||||||||||| | Sbjct 42896 TGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 42837 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 || || |||||| || ||| ||| ||||||||||||||| | ||||||||||| Sbjct 42836 GAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 42777 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCAA 26070 |||| || ||||| ||||||||| || | ||| || | || | | ||| Sbjct 42776 GCACACTGACTTTGCTTGCCTGCTCCACTC---TCAC---CTGAAGAACCGCGCCAGCAA 42723 Query 26071 -GAGA----CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 |||| |||| || ||||||| || || || |||||| ||||||| Sbjct 42722 GGAGATTATCCGT-GAC---ATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGA 42667 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 ||||||||||| || || |||| || ||||||| Sbjct 42666 CTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTG 42607 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCT 26244 ||| ||| ||||| | |||||| | || ||| || | ||||| ||| | || Sbjct 42606 AGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCTACAAGTCCTCC- 42548 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||||||||| ||||| || ||| || |||||||||||||| || ||| Sbjct 42547 AACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAG 42488 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 42487 CGTGTCGGCGAGTACCA 42471 >seq135 Length=88816 Score = 219 bits (242), Expect = 8e-52 Identities = 837/1282 (65%), Gaps = 59/1282 (5%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 |||||||| |||||||||||||||||||| |||||| || ||| | || ||||| || Sbjct 29205 AGGGCAGCATGGTAGATGGTCTCAAAGATTTGCTTGTTCAG-CTCACGAGCTTCGGGTGA 29263 Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 |||||| | |||||| | | ||||| | || || |||||||| || || | ||| Sbjct 29264 TTCGAAGGGAAGACGCAG-AGCAAGGAAAG-CATCAGCAAGTCCCTGGACACCAACACCA 29321 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | |||||| | ||| | || ||| || || || |||| || | Sbjct 29322 ATGGGTCGGTGACGGCTGTTGCTGTTGCGAGC-CTCCTGA-ACAGGGTAGTAGTTCACAT 29379 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA- 221653 |||| | ||||||||| | ||| |||||||| || | |||| |||| Sbjct 29380 CGATGATGCGGTTGAGGTTACG------GAC---AACCACCTTTGTAA-CTTC--GTGAA 29427 Query 221654 ----TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 || || || | || || |||| | | || |||||||| || || | Sbjct 29428 GCTTTTTAAAGTCA--TAGCATCCTTCGTTGTAG---TCGACAAAAGCAGGGAGAGCCAA 29482 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 ||||| ||| || || || ||||| || | |||| || ||||| || || Sbjct 29483 AGAGGCCAAGTTGCAGACAGCGACCTCATCAGGCGCAGAGTACTCAATAATCTCAGTGCA 29542 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-T 221828 ||||||| || |||||| ||||||| || || || |||||| ||| |||| | Sbjct 29543 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGCTAT 29601 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||||||||| ||||| |||||||| ||| ||| |||| || || ||| | Sbjct 29602 CCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCACA 29661 Query 221889 GTTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGGTA 221944 | | |||| || | | ||| | ||| | ||||| ||| |||||| | || Sbjct 29662 GCT-TCTGAGCTCGGATAGTCTTGC-GACCACGTCCCTC---CTTCTCATACTTCTCATA 29716 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| | | || | || || || || | ||||| || || || ||| Sbjct 29717 CAGAGCCT--CGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCATTAGGGCAC 29774 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 |||| | |||| | | ||| | | ||| | || |||||| || || |||||||| || Sbjct 29775 ATCAAAGTCCAATCCAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGA 29834 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || || || | || || ||| ||| ||||| ||| || | || || | Sbjct 29835 GCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGG 29894 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| | || |||||||| ||||| || |||| ||| | || || || |||||| Sbjct 29895 AACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG 29954 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAG 222243 || |||||||| || || || | || | |||||||| ||||| | || | | Sbjct 29955 TTTCCACCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACACGAAGCATGGGGATGAT 30013 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGC 222303 |||||||| |||||| ||||| || || | || ||| | || ||| || Sbjct 30014 ACCGTTGGAGGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGCAC---GGATAC-GGT 30069 Query 222304 AGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 ||| | |||||||||||| || || || |||||||| || |||| | ||| | Sbjct 30070 GGACGTTGAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTAT 30129 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||| ||||| || ||| ||||| | || | || || || || || | ||||| Sbjct 30130 CGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGAG 30189 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 || | || || ||||| || || ||||| || || |||||| | || |||| Sbjct 30190 CTTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCTGGACA 30249 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATC 222539 | || | ||| ||||| | ||| | | |||||||| || ||| | || || Sbjct 30250 TGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAATGCCAACAGCCACTC 30309 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 ||| ||||| ||| |||| ||| ||| || | |||| || || || || Sbjct 30310 GCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGATATGA 30367 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 | ||||| |||||||| || ||||| | | || ||||||| | | | || | ||| Sbjct 30368 TCGCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATGGC 30427 Query 222658 GGCGTCCAGCTCCGACTTGTGC 222679 || ||| |||||| ||||||| Sbjct 30428 GGAGTCAAGCTCCTCCTTGTGC 30449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828092404160