Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq135 233 2e-56 seq219 98.7 1e-15 >seq135 Length=88816 Score = 233 bits (258), Expect = 2e-56 Identities = 976/1515 (64%), Gaps = 63/1515 (4%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| ||||| ||| || | ||||| | ||| ||||||| | | Sbjct 30394 TACTTCGGCTTCAAGACCCTGGAGC-GATCATATCTCCTGAAGCTTGATGGCAAGATTGT 30336 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || |||||| ||||| | ||||| || || | ||||| || || ||||||| Sbjct 30335 TGAGCGGCCACAGCACATGATTATGCGAGTGGCTGTTGGCATTTGGGGAGACAACATTGA 30276 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCA 75322 |||| | ||||||||| || |||||| || | | || | || || | || Sbjct 30275 GCGTGTCCTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCGTCCCCC 30218 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 ||||||||||| |||||||| || | | ||| | ||| |||||| | | | || Sbjct 30217 ACCCTCTTCAACGCTGGTACCCCGCAAGCTCAGCTCTCCTCATGCTTCTTGGTTGACATG 30158 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || | |||||||| | ||| | | | ||||| || || ||| Sbjct 30157 AAGGACGACAGCATTGAGGGTATCTACGATACTTTGAAGACATGTGCCATGATTTCCAAG 30098 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCG 75501 |||||| ||||| || | || |||| | | | |||| | ||| ||| ||| Sbjct 30097 ATGGCTGGTGGTATCGGCCTCAACGTCCACCGTATCCGTGCCAC--AGGCTCTTATATCG 30040 Query 75502 GGGG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || ||||| ||| || | ||||| || || |||||||| || || ||| ||| | Sbjct 30039 CCGGCACAAACGGTACCTCCAACGGTATCATCCCCATGCTTCGTGTCTTCAACAACACTG 29980 Query 75561 CGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGG 75614 | | || || | || | || ||||| || || | || ||||| | | Sbjct 29979 CCAGATACGTCGACCAGGGTGGAAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCG 29923 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAG 75674 | || ||||| |||||| || | ||||||||||| | || ||||| || | |||| Sbjct 29922 AGCCTTGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAG 29863 Query 75675 AGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 ||| || ||| | || || || | || ||||| || || || ||||||||||| Sbjct 29862 AGG-TCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGC 29804 Query 75734 GTTGAGGAGGG--TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCC 75790 || ||| || ||| | ||| || | | || || | || || || || || | Sbjct 29803 GTCGAGAAGAACTTGG--ATTGGACTTTGATGTGCCCTAATGAATGC-CCTGGCCTTGCT 29747 Query 75791 GAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC 75849 ||| || ||| ||||| || || || || || |||||||| ||||||| | | Sbjct 29746 GACTGCTATGGC-GAGGAATTCGAGGCTCTGTATGAGAAGTATGAGAAGGAGGGACGTGG 29688 Query 75850 ---CAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGG 75905 ||| |||| | | ||| | || | | ||| | |||| || | | ||||| | Sbjct 29687 TCGCAA---GACTATCCGAGCT-CAGAAGCTGTGGTACTCTATCCTGGAGGCCCAGACTG 29632 Query 75906 AGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGA 75965 ||||||| | || | ||||| ||||||||| || ||| ||||| ||||| |||| Sbjct 29631 AGACTGGTAACCCCTTCATGCTCTACAAGGATAGCTGCAACCGCAAGAGCAACCAGAAGA 29572 Query 75966 ATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGG 76025 | ||||||| ||| ||||| || || ||||| || ||| | |||||| | | | Sbjct 29571 ACCTGGGAACCATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTCTGCGCCTG 29512 Query 76026 ATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC------AATG 76079 ||||| ||||| ||||| ||||| || | || || || | |||| || | Sbjct 29511 ATGAGGTCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCTTTTGTCGACTACAACG 29452 Query 76080 AAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAA 76139 ||| || | | ||| | | |||| ||||| ||| | |||||| | ||| | | Sbjct 29451 AAG-GATGC-----TATGACTTTAAAAAGCTTCACGAAGTTACAAAGGTGGTTGTCCGTA 29398 Query 76140 ATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATA 76199 | || ||||| |||| || || | || || ||| || || || || || | Sbjct 29397 ACCTCAACCGCATCATCGATGTGAACTACTACCCTGTTCAGGAGGCTCGCAACAGCAACA 29338 Query 76200 TGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGC 76258 || ||| |||| |||||| | ||||| || || || || |||| || || | ||| Sbjct 29337 GCCGTCACCGACCCATTGGTGTTGGTGTCCAGGGACTTGCTGATGCTTTCCTTGCTCTGC 29278 Query 76259 CGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATG 76318 || | | || || ||| ||||| ||| |||| | |||||||| ||||| Sbjct 29277 GTCTTCCC-TTCGAATCACCCGAAGCTCGTGAGCTGAACAAGCAAATCTTTGAGACCATC 29219 Query 76319 TATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACA 76378 || || || |||| ||||| | || | || | | ||||| | ||| | || Sbjct 29218 TACCATGCTGCCCTTGAGGCCTCTATGGAGATTGCCAAGGTTGAAGGTCCTTATTCGTCA 29159 Query 76379 TTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC 76438 || |||| || ||||| || |||| | ||||| | ||| |||||||| | | Sbjct 29158 TTCAAGGGATCACCCGCCTCTGAAGGCATTCTTCAATATGACATGTGGGATGT------C 29105 Query 76439 AAGCTCAACTAC------GACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 76492 |||| || | || || |||||| |||||||| | || |||||| | |||||| Sbjct 29104 AAGCCCACCGACCTGTGGGAGTGGGATTCGCTCAAGGAGCAAATTAAGGAGCACGGTCTT 29045 Query 76493 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552 || ||||| | | | || || ||||| || ||| ||| | || ||||||||||| Sbjct 29044 CGCAACAGCTTGCTCGTCGCCCCTATGCCCACTGCCAGCACTTCCCAGATCTTGGGTAAC 28985 Query 76553 AATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAG 76612 || || || ||||| || ||||| | |||||||||| | || | ||| || || ||| Sbjct 28984 AACGAGTGTTTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAG 28925 Query 76613 TTTGTCATTGTCAAC 76627 || |||||||| Sbjct 28924 TTCCAGGTTGTCAAC 28910 >seq219 Length=54288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 342/524 (65%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || || || ||||| ||||||| ||| | |||||||||| | || |||| Sbjct 43279 TGGACCGCCGAGGAGATTGATCTGTCCAAGGATTTGCACGACTGGAACAACCGCCTGAAC 43220 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| |||||||||| |||||||||| || || || ||| Sbjct 43219 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATT 43160 Query 64831 GTTTTTGAGAATATCAATAACAATTTT-GCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | ||| |||| || || ||||| ||| || || | Sbjct 43159 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGC-GAGGTTCAGATCCCCGAGGCTCGATG 43101 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| ||||| || | | Sbjct 43100 CTTCTACGGTT-TCCAGATCATGATGGAGAACATCCACTCCGAGACATACTCTCTGCTCA 43042 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGC-AGTTATTTGAAGCCATCCAAACT 65007 | |||| ||| | ||||| | | | | | | | | || | || || | ||| Sbjct 43041 TCGACACCTACGTCAAGGA-GCACAGCCAGCGCACCTACCTCTTCAACGCTATTGAGACT 42983 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCT 65064 | || || ||| |||||||| | ||||| || || ||| | |||| || ||| Sbjct 42982 ATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCT 42923 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 ||||| ||| |||| || |||| ||||| ||| ||||||||||||||| ||| Sbjct 42922 ---TCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGA 42866 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 | || | | || | ||| | |||||| | ||||||||||| || || |||||| Sbjct 42865 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCC 42806 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || || || |||||||| ||| || ||||| Sbjct 42805 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 42762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596558869204320