Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq54 269 3e-67 seq5 176 6e-39 seq38 168 9e-37 seq133 127 3e-24 >seq54 Length=139347 Score = 269 bits (298), Expect = 3e-67 Identities = 556/825 (67%), Gaps = 13/825 (2%) Strand=Plus/Plus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| ||||| || | ||||| || || |||||||| ||||| || |||||| | || Sbjct 63248 GCTCTGCGTCGTCTCCGAACTGCTTGCGAGCGTGCCAAGCGAACCCTTTCTTCTTCTGCC 63307 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || ||||||| || || | || || || |||||||||| || | || ||| Sbjct 63308 CAGACCTCCATTGAGATCGACTCTCTCTTCGAGGGTGTTGACTTCTACACCTCCATCACC 63367 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| ||||| || ||| | | ||| | || | || | || || || Sbjct 63368 CGTGCCCGTTTCGAGGAGCTTTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGAC 63427 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || ||| || || ||||| || ||||| |||| |||| || ||||| || || Sbjct 63428 CGCGTCCTTGCCGATGCCAAGATCGACAAGTCCCAGGTCCATGAGATCGTCCTCGTCGGT 63487 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 ||||| |||||||| || || || || | | | || |||||| || || Sbjct 63488 GGATCTACCCGTATCCCCCGTATCCAGAAGCTCATCACCGACTACTTCAACGGCAAGGAG 63547 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 63548 CCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCT 63607 Query 196421 ATTCTCTCAGGTGTTGACAATAAT--AACGTCCA------AGATCTTCTGCTACTTGATG 196472 || || || || ||||| | | | ||||| ||||| ||||| || || | Sbjct 63608 ATCCTGTC---TGGTGACACTTCTTCCAAGTCCACCAATGAGATC--CTGCTTCTCGACG 63662 Query 196473 TTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATA 196532 | || ||| | || |||||| | || || || ||||| | ||||| || | || Sbjct 63663 TCGCTCCCCTGTCTCTGGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCCC 63722 Query 196533 GGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAAC 196592 | ||||| || || || || |||||| | ||||| || || | || || || || | Sbjct 63723 GCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAGC 63782 Query 196593 CAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTAC 196652 | ||||| | ||||| || || || || || || || | ||||| ||| | || | Sbjct 63783 CCGGTGTCCTCATTCAGGTCTACGAGGGTGAGCGTCAGCGCACCAAGGACAACAACCTGC 63842 Query 196653 TTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATG 196712 | || | ||||| | || || || || | || || | |||||||| |||||| | | Sbjct 63843 TCGGCAAGTTCGAGCTCACTGGCATCCCTCCCGCCCCTCGTGGTGTTCCCCAGATTGAGG 63902 Query 196713 TTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTG 196772 | |||||| | || || || || || | |||||| | |||| || |||| ||| Sbjct 63903 TCACCTTCGACGTTGATGCCAACGGTATCATGAACGTCTCCGCTGTTGAGAAGGGCACTG 63962 Query 196773 GCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTG 196832 |||| || | |||||||| || ||||| |||||||| || || || |||||||| |||| Sbjct 63963 GCAAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATTG 64022 Query 196833 AACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | || ||| || ||||| || ||||||| ||| || || |||| Sbjct 64023 AGCGCATGCTTTCCGATGCTGAGAAGTACAAGGAGGAGGATGAGG 64067 Score = 215 bits (238), Expect = 7e-51 Identities = 494/736 (67%), Gaps = 7/736 (1%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 62429 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGGTGT-GA 62487 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || || | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 62488 TATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 62547 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| |||| |||||||| || || ||| || |||||||| || || || Sbjct 62548 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 62607 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | |||||||||||||| | || | || || | ||||| Sbjct 62608 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGACGCCGAGGTTCAGGCTGATAT 62667 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | ||| ||||| | | | || || Sbjct 62668 GAAGCACTTCCCCT-TCAAGATCGTC--GACAAGGCCTCCAAGCCCGTCGTCGAGGTCGA 62724 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||| || || | ||||| || || || || ||| | ||| || Sbjct 62725 GTTCAAGGGCGAGACCAAGACCTTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCAA 62784 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || | | | |||| || || || | || || | ||||| Sbjct 62785 GATGCGTGAGACCGCCGAGGCCTACCTGGGCGGCACCGTCAACAACGCCGTCATCACTGT 62844 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 62845 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTGCCGG 62904 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 ||| ||| || | || ||||| || || || || ||||| ||||| || ||||| || Sbjct 62905 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCTTGA 62964 Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903 |||||| || | || || || | ||||| ||||| ||||||||||| || || Sbjct 62965 CAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGTACTTTCGA 63024 Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963 ||| || || || | ||||| | ||||| ||||| || ||| | ||||| ||||| || Sbjct 63025 TGTTTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 63084 Query 195964 TCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCC 196022 ||| | |||||||| |||||||| ||||| || || || ||| | |||||| Sbjct 63085 TCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTCGTC-AACGAGTTCA 63143 Query 196023 GTCGAAAGAATAAGAA 196038 || ||||| ||||| Sbjct 63144 AGCGCAAGAACAAGAA 63159 >seq5 Length=314554 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 52549 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 52490 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 52489 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 52430 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || || |||||||| ||||| || ||||| || ||||| || |||||| Sbjct 52429 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 52370 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || ||||||||||| || ||||| || || | || || |||||||| Sbjct 52369 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGC 52320 >seq38 Length=159530 Score = 168 bits (186), Expect = 9e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 138495 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 138554 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||||| || || ||||| |||||||| || || ||| Sbjct 138555 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 138614 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| |||||||| || || || | || |||||| Sbjct 138615 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACTACAAC 138674 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||| | ||||| | ||||| |||||| Sbjct 138675 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGCCTTCGTGGTGGT 138722 Score = 152 bits (168), Expect = 7e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || | || || || || ||||| || ||||| |||| Sbjct 139003 GTGGTATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACAATCACACTGGAGGTGGAGT 139062 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || ||||| || ||||| | ||||| || || ||||| || ||||| || | Sbjct 139063 CATCTGATACCATCGACAATGTCAAATCAAAGATCCAGGACAAGGAGGGTATTCCCCCTG 139122 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || ||||| ||||||||||| ||||| ||||| || |||||||| || | Sbjct 139123 ACCAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACT 139182 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||| || || ||| | ||||| | || || ||||| Sbjct 139183 ACAACATCCAGAAGGAGAGCACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 139234 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || |||||||| || || || || ||||| || ||||| ||||| || || || ||||| Sbjct 138792 GTCAAAACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCCGATACCATCGAC 138851 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| || || || || || ||||| || || || Sbjct 138852 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTCATC 138911 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || |||||||| |||||||| || || || || || | || |||||| | || |||||| Sbjct 138912 TTCGCTGGTAAGCAGCTTGAGGACGGCCGGACTCTGTCCGACTACAACATCCAGAAGGAG 138971 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||||||| ||| | || || | || || |||||| Sbjct 138972 TCTACTCTCCACTTGGTCCTTCGTCTGCGTGGTGGT 139007 >seq133 Length=89200 Score = 127 bits (140), Expect = 3e-24 Identities = 473/733 (65%), Gaps = 19/733 (3%) Strand=Plus/Plus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || || || || ||||| ||||||| || | || || ||||| || ||||||||| Sbjct 1044 GCTGTCGTCACCGTCCCTGCCTACTTCAACGACGCTCAGCGTCAGGCTACCAAGGACGCT 1103 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | | ||||| | || || ||| | || ||||| || || || || || || ||| Sbjct 1104 GGTCAGATTGCTGACCTCGACGTTCTCCGTATCATCAACGAGCCTACTGCTGCCGCCATT 1163 Query 195830 GCTTATGGTCTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || || ||||||| | |||| || | || || || |||||| ||||| Sbjct 1164 GCCTACGGTCTGGGCTCCGGCAAGACTGAGAAGGAGCGTAACGTCCTGATCTACGATCTT 1223 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| || ||||| || || || | || | || ||| | ||| || ||| Sbjct 1224 GGTGGTGGTACTTTCGATGTTTCCCTGCTTAGCATCCAGGGCGGTGTCTTCACTGTCAAG 1283 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006 ||||| |||||||| || || | ||||| | || ||||| | | | | | | | Sbjct 1284 GCTACCGCTGGTGACACCCACTTGGGTGGCCAGGACTTCGACAC-CAACCTGTTGGACCA 1342 Query 196007 TTGTCTG-ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCT 196063 || | | |||||| || ||| ||||| | | | | || | || | ||| Sbjct 1343 CTGCAAGAAGGAGTTCATCCGCAAGTCCAAGAAGG--ACCCCAGCAACGACCCCCGTGCT 1400 Query 196064 CTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTC 196121 || || | || | ||||| ||||| |||||||| || || ||||| | || || | Sbjct 1401 CTCCGAAGACTCCGCACTGCTTGTGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCC 1458 Query 196122 AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCC 196181 | | | |||||||||| || | || || || |||||| | || || |||| Sbjct 1459 AGGCCACCATTGAGATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCC 1518 Query 196182 GTGCACGTTTTGAAGAGTTAAACTC---TGATTTGTTTAGGAAGTGTATGGAACCTGTTG 196238 |||| ||||| || ||| | ||| | | || | | | | | || ||||||| Sbjct 1519 GTGCTCGTTTCGAGGAGCTCAACGCCAAGGCCTTCTCTGGCA---CCCTCGAGCCTGTTG 1575 Query 196239 AACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGG 196298 || || || || || ||||| ||| || || || |||||||| || | Sbjct 1576 CTCAGGTCCTCAAGGATGCCGGCATGGAGAAGAGCGCCGTCGAGGAGATTGTCCTCGTCG 1635 Query 196299 GAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAG 196358 | || || |||||||| || ||||| || || | || ||| |||||| | || Sbjct 1636 GTGGTTCTACCCGTATCCCCAAGATCCAGAAGCTTCTGTCTGAGTTCTTCGACGGCAAGA 1695 Query 196359 ATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTG 196418 | | | || | |||||||| ||||| || || || || ||||| ||||| ||||| | Sbjct 1696 AGCTCGAGAAGAGCATCAACCCCGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAGGCCG 1755 Query 196419 CTATTCTCTCAGG 196431 ||| ||||| || Sbjct 1756 GTATCCTCTCCGG 1768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657850566700080