Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14 134 4e-26 seq219 125 2e-23 seq135 125 2e-23 seq12 105 2e-17 seq54 91.5 4e-13 >seq14 Length=252920 Score = 134 bits (148), Expect = 4e-26 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | |||| | ||| | ||| || |||||||| || ||| || ||||| Sbjct 243909 TCTTCCAGAGCTTTGACGAGACGTCTCTGGATGTAACCAGTCTCAGCTGTCTTGACAGCA 243850 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| || |||||||| | |||| || || Sbjct 243849 GTATCAATAAGACCTTCACGACCAGCCATGGCGTGGAAGAAAAACTCTGATGGAGTAAGA 243790 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | | ||| |||| ||||| || || |||||||| || | ||| ||||| Sbjct 243789 CCACGAAGATACGAGTTCTCTACGAAGCCGCGAGCCTCGGGAGAGTAATCGTCTTTGGTG 243730 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | || || ||||| |||| ||||||||||| || || |||| Sbjct 243729 AAATGGGGAAGCGTTCGGTACTTGAAGCCGAATGGAATACGCTTTCCTTCGACAATCTGT 243670 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| | | || |||| || ||||| || Sbjct 243669 TGTCCGACGAGCGCTGTCATTTGAGAAATGTT 243638 Score = 102 bits (112), Expect = 2e-16 Identities = 109/141 (77%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 |||||||| ||||| ||| || |||||| | || ||||| |||||| | |||||||| Sbjct 244686 AGAATTTCCTTCAA-ACGAGGCACACCAAGTGTGACGTT---CTTGGAAGACACACCAGC 244631 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| |||||||||||||| || | ||||| | || |||||||| || ||||||| Sbjct 244630 AAAATGGAAAGTATTCAGCGTCATCTGAGTGGCGGGTTCACCAATGGACTGAGCCGCAAG 244571 Query 301932 CATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 244570 AACACCAACCATTTCACCAGG 244550 >seq219 Length=54288 Score = 125 bits (138), Expect = 2e-23 Identities = 253/370 (68%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || || ||||| | |||| || || ||| || || | ||||| |||||| || Sbjct 43129 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAAC 43070 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 ||||| || ||||| ||| || || || || ||| |||| || | |||| | Sbjct 43069 ATCCACTCCGAGACATACTCTCTGCTCATCGACACCTACGTCAAGGAGCACAGCCAGC-G 43011 Query 133409 CACAAAC-TATTCAACGCCATTAGCGAATTTCC-TTGTATTAAAAAGAAATCTGACTGGG 133466 ||| || | |||||||| ||| | || | ||| ||| ||| ||||| | || |||| Sbjct 43010 CACCTACCTCTTCAACGCTATT-GAGACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGG 42952 Query 133467 CTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526 | || || ||||||||||||||| | ||||| ||||||||||| ||||||| Sbjct 42951 CCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTG 42892 Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTG 133586 || ||||| || || ||||| || || || ||| || || ||||| || ||| | | Sbjct 42891 CTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAG 42832 Query 133587 GTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACA 133646 || | | ||||| ||| || || ||||| || || || | ||||||| || |||| Sbjct 42831 GTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACA 42772 Query 133647 CCGAATTTGC 133656 | || ||||| Sbjct 42771 CTGACTTTGC 42762 >seq135 Length=88816 Score = 125 bits (138), Expect = 2e-23 Identities = 559/878 (64%), Gaps = 13/878 (1%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||||||| ||| ||||| || || |||||| || | ||||||||||| Sbjct 29522 GTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTT 29581 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||| || ||| | ||| | || ||||| |||| || Sbjct 29582 GCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGC 29641 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 ||||| || ||| || | | || || |||| | || ||| Sbjct 29642 CTCCAGGATAGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCACGTCCCTCCTT 29701 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 |||||| ||| |||||| | | | ||||| || || || ||| || |||||||| Sbjct 29702 CTCATACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 29761 Query 155870 CTTATCGGGGCAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATAC 155926 | || ||||| | || | |||| | || || ||| | |||| ||| || | Sbjct 29762 TTCATTAGGGCACATCAAAGTCCAATCCAAGTTCTTCTCGA---CGCGCTTCATGAACAG 29818 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| ||| | ||| ||| ||||| | || ||| || | |||||| || Sbjct 29819 ATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTT 29878 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||| | || ||||| || || || ||||| Sbjct 29879 CTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAA 29938 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| | |||| |||||||| || || || | ||||| || |||||||||| Sbjct 29939 GGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACG 29998 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || || ||||| ||||| || || || || ||| |||| || || | | Sbjct 29999 AAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGC 30058 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | | || | | || || |||||||| | |||| || ||||| || ||| Sbjct 30059 ACGGATACGGTGGACGTTGAGGCCGATACCACCAG-CCATCTTGGAAATCATGGCACATG 30117 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCAC 156281 ||| | ||||| | | ||||| ||||| || || | ||| | | ||| |||| Sbjct 30118 TCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGA-AGCAT 30176 Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 || | |||| | | || || ||||||||||| || || || | ||||| |||| Sbjct 30177 GAGGAGAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAG 30236 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATA 156401 | || | ||||| | ||||||||| | ||||| || || ||| Sbjct 30237 AATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAATG 30296 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGC 156461 | | || || | ||| ||| ||||| || ||||| |||||| ||||||| | Sbjct 30297 CCAACAGCCACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTC 30356 Query 156462 AGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || || |||| || ||||| || || || ||||| || Sbjct 30357 AGGAGATATGATCGCTCCAGGGTCTTGAAGCCGAAGTA 30394 >seq12 Length=264833 Score = 105 bits (116), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 || || ||| | || || ||| | ||| | | || ||||| |||| | |||||| Sbjct 221704 TGAACTCTGAAGGCGTCCGATACCTCAAACAATCGCTCCTTGAGGAAGGACGCCGCACCG 221763 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 |||| ||||||||||||||| |||||||| ||||| || ||||||||||| ||||| | | Sbjct 221764 TGTGCAATCATACAATCACGTTCCATTTCTCCGAATCGGAGACCACCATCTCGAGCACGA 221823 Query 251551 CCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGC---GGCTATGTTGC 251607 ||||| | ||||| | || | | || ||||||| |||| ||| ||| | Sbjct 221824 CCCTCCACCGGCTGTCTTGTCATGATCTGCACAGGACCG--CGAGCTCTGGC-ATGGATC 221880 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 || |||| ||||| || ||| ||||||||| ||| || || | ||| Sbjct 221881 TTGTCATCCACCATGTGACGGAGTCGCTGGTAGTATGTTGGTCCAAAGAA 221930 >seq54 Length=139347 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 233282 GCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGACCTACCC 233341 ||||||| |||||||||||||||||| || | ||| |||||||| || || | ||| Sbjct 47252 GCAATCAGACAATCACGTTCCATTTCTCCCAGACGGAGACCACCTTCTCGCGATCGACCT 47193 Query 233342 TGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAATTTTATCT 233401 | | | ||| |||||||||| | ||| ||||| |||||||| | | || || || Sbjct 47192 TCGGTGGGTTGTCGAGTTAAAATGGCTCTGGGACCGCGAGCACGAGAGTGCATCTTGTCC 47133 Query 233402 TTAACCATATGCTTCAGTCTCATATAATAA 233431 | ||||| |||||||| | | |||||| Sbjct 47132 TGCACCATGTGCTTCAGACGCTGGTAATAA 47103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471790463822943