Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq37 131 2e-24
seq219 129 7e-24
seq17 129 7e-24
seq135 122 1e-21
seq1 107 2e-17
>seq37
Length=161961
Score = 131 bits (144), Expect = 2e-24
Identities = 92/105 (88%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||| | ||| || ||||||||||| |||||| | || |||||| |||||||||||||||
Sbjct 85046 CCAATTTCCTTGATATCAAGCCTCTCCTCGATGTCGGCTGCAAGACTGTGGCCAACATGA 84987
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 84986 TCAAGGGCAAGTCTCCTGAGGAGATCCGCAAGACTTTCAACATCA 84942
>seq219
Length=54288
Score = 129 bits (142), Expect = 7e-24
Identities = 176/244 (72%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||||| || ||| |||||| |||||||||||||| | || || ||
Sbjct 42465 GCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATG 42524
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || ||||||| | ||||||| ||| ||| |||||| | |
Sbjct 42525 TTCTCCATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGAGAGCGACA 42584
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868
||||| || ||||| |||||||| |||||||| ||| ||| |||||||||||| ||
Sbjct 42585 AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGA 42644
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|||||| | || || | ||| ||| ||||| | |||||| |||||| || ||
Sbjct 42645 AGAGCGCAA--GGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGA 42702
Query 868929 TGAT 868932
||||
Sbjct 42703 TGAT 42706
Score = 120 bits (132), Expect = 4e-21
Identities = 206/291 (71%), Gaps = 15/291 (5%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | |||||| |||| || || |||||||| || | |||
Sbjct 42779 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCTCTCTT 42838
Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297
||||||||| ||||||| ||| | || || ||| ||||| ||||| || || ||||
Sbjct 42839 CTTGAGCCAGAAGATGGAGGCAAAGGCT-CCGCTGAAGAAGATACCCTCAACAGCAGCAA 42897
Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354
|| | | ||| |||| ||||||| | ||| | |||| | ||||||||| || |
Sbjct 42898 AGGCAACGAGACGCTGGGCAAAG--GAAGAG----TTCTTGTCCTGGATCCACTTGATGG 42951
Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413
|||| |||||||| || | | | || | || || || ||| ||||||| ||| |
Sbjct 42952 CCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGC 43011
Query 869414 TTTTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| ||| | | |||||||| ||||||||||| || || || || |||||
Sbjct 43012 GCT--GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTC 43060
>seq17
Length=239961
Score = 129 bits (142), Expect = 7e-24
Identities = 245/358 (68%), Gaps = 6/358 (2%)
Strand=Plus/Minus
Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTG 92675
|| ||| |||||| | ||| | ||| | |||||| ||| |||||||||| | ||||
Sbjct 137721 GTCAGGCGCTCCTGGATCTGCAGCCGGCGCGCAAACATCTCGGCGATGCGCGGCAGCTTG 137662
Query 92676 CTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGGC 92735
| |||||||| | |||| | |||||| | ||| ||||||||| ||||||
Sbjct 137661 GAGATGCCGATGACGGCGTTGTTGGGGATGTAGCCAATGTGCATCTTGCCCATGAAGGGC 137602
Query 92736 AGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCCC 92795
| ||| ||||||||||||| ||| | | ||| | ||| || ||||||||||||
Sbjct 137601 ACCAGGTGGTGCTCGCACAGCGAGTACACGTCAATGTCCTTGACAATCACCATCTCGTTG 137542
Query 92796 GAGGCCTC--GGCAAAGAGCG-CGTCGCCGATGGCCTCGGCCAGCGTCATGCGGTGGCCG 92852
| |||| || | | ||| ||| | | ||| || | | || ||| |||
Sbjct 137541 TGGCCCTCCTGGAAGATGGCGCCGTTGACAATG---TCCGAGATGTTCTCCTGGTAGCCC 137485
Query 92853 CGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTCCAGGAGGCCCTCGCGC 92912
||| |||| ||||||||| || ||| |||||| |||| ||||||||||||
Sbjct 137484 TTGGTGAAGTCCAGCATGGCCTTTGCGTACCGCTGCGGCGTCGCCAGCAGGCCCTCGCGC 137425
Query 92913 CGCACGTCCTCGCCCAGGCAGGCCAGCAGCGTCCTCGTGGCGTCGGCCATGCGCGCCA 92970
| ||||||||||| ||| ||||||||||| || |||| | ||||||| |||
Sbjct 137424 TGGGGGTCCTCGCCCACGCACTCCAGCAGCGTCGTCACGGCGCCCTTCATGCGCTCCA 137367
>seq135
Length=88816
Score = 122 bits (134), Expect = 1e-21
Identities = 217/314 (69%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| | || |||| ||| ||||| || |||||||| | || ||||||||
Sbjct 29963 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGA 30022
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | || | ||| | ||| || | ||| || | |||
Sbjct 30023 GGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGACGTTGAGGCC 30082
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243
||| || || ||| |||||| || | || || ||| || | || |||||||| ||||
Sbjct 30083 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTCAAAGTATCGTAGATACCCT 30141
Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303
| || |||| |||||||||| || | ||||| || ||| || | |||| || |
Sbjct 30142 CAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGCGGGGTAC 30201
Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363
| ||||||||||| ||||| | ||| ||| || || | | |||||| || ||| |
Sbjct 30202 CAGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATG 30261
Query 1630364 TGGCGAGCACGCGC 1630377
| | || || |||
Sbjct 30262 TCTCAAGGACACGC 30275
>seq1
Length=401958
Score = 107 bits (118), Expect = 2e-17
Identities = 116/151 (77%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
|||||||||| || ||||| |||||||| || ||| || || ||| | || || ||||
Sbjct 276395 AGGACAGCATTGGAGGCACAGTGACGTGTGTCATTCGAAATGTCCCGACTGGACTTGGCG 276336
Query 19105 AGCC-GTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
|||| ||| ||| |||| | |||||| | || ||||||| |||||| || ||||||
Sbjct 276335 AGCCCGTGTTTTC-CAAGTTGGAGGCCACACTGGCCCACGGCATGCTTAGCATTCCGGCC 276277
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194
|| ||||||||||| || ||| ||| ||||
Sbjct 276276 ACAAAGGGATTCGAAATCGGCTCCGGATTTG 276246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107021108921163
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |