Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq37 131 2e-24 seq219 129 7e-24 seq17 129 7e-24 seq135 122 1e-21 seq1 107 2e-17 >seq37 Length=161961 Score = 131 bits (144), Expect = 2e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||| | ||| || ||||||||||| |||||| | || |||||| ||||||||||||||| Sbjct 85046 CCAATTTCCTTGATATCAAGCCTCTCCTCGATGTCGGCTGCAAGACTGTGGCCAACATGA 84987 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| || ||||||||||||||||| || ||||||| Sbjct 84986 TCAAGGGCAAGTCTCCTGAGGAGATCCGCAAGACTTTCAACATCA 84942 >seq219 Length=54288 Score = 129 bits (142), Expect = 7e-24 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | || || || Sbjct 42465 GCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATG 42524 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||| ||| |||||| | | Sbjct 42525 TTCTCCATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGAGAGCGACA 42584 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868 ||||| || ||||| |||||||| |||||||| ||| ||| |||||||||||| || Sbjct 42585 AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGA 42644 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||||| | || || | ||| ||| ||||| | |||||| |||||| || || Sbjct 42645 AGAGCGCAA--GGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGA 42702 Query 868929 TGAT 868932 |||| Sbjct 42703 TGAT 42706 Score = 120 bits (132), Expect = 4e-21 Identities = 206/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| || || |||||||| || | ||| Sbjct 42779 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCTCTCTT 42838 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| | || || ||| ||||| ||||| || || |||| Sbjct 42839 CTTGAGCCAGAAGATGGAGGCAAAGGCT-CCGCTGAAGAAGATACCCTCAACAGCAGCAA 42897 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354 || | | ||| |||| ||||||| | ||| | |||| | ||||||||| || | Sbjct 42898 AGGCAACGAGACGCTGGGCAAAG--GAAGAG----TTCTTGTCCTGGATCCACTTGATGG 42951 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413 |||| |||||||| || | | | || | || || || ||| ||||||| ||| | Sbjct 42952 CCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGC 43011 Query 869414 TTTTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | | |||||||| ||||||||||| || || || || ||||| Sbjct 43012 GCT--GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTC 43060 >seq17 Length=239961 Score = 129 bits (142), Expect = 7e-24 Identities = 245/358 (68%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTG 92675 || ||| |||||| | ||| | ||| | |||||| ||| |||||||||| | |||| Sbjct 137721 GTCAGGCGCTCCTGGATCTGCAGCCGGCGCGCAAACATCTCGGCGATGCGCGGCAGCTTG 137662 Query 92676 CTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGGC 92735 | |||||||| | |||| | |||||| | ||| ||||||||| |||||| Sbjct 137661 GAGATGCCGATGACGGCGTTGTTGGGGATGTAGCCAATGTGCATCTTGCCCATGAAGGGC 137602 Query 92736 AGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCCC 92795 | ||| ||||||||||||| ||| | | ||| | ||| || |||||||||||| Sbjct 137601 ACCAGGTGGTGCTCGCACAGCGAGTACACGTCAATGTCCTTGACAATCACCATCTCGTTG 137542 Query 92796 GAGGCCTC--GGCAAAGAGCG-CGTCGCCGATGGCCTCGGCCAGCGTCATGCGGTGGCCG 92852 | |||| || | | ||| ||| | | ||| || | | || ||| ||| Sbjct 137541 TGGCCCTCCTGGAAGATGGCGCCGTTGACAATG---TCCGAGATGTTCTCCTGGTAGCCC 137485 Query 92853 CGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTCCAGGAGGCCCTCGCGC 92912 ||| |||| ||||||||| || ||| |||||| |||| |||||||||||| Sbjct 137484 TTGGTGAAGTCCAGCATGGCCTTTGCGTACCGCTGCGGCGTCGCCAGCAGGCCCTCGCGC 137425 Query 92913 CGCACGTCCTCGCCCAGGCAGGCCAGCAGCGTCCTCGTGGCGTCGGCCATGCGCGCCA 92970 | ||||||||||| ||| ||||||||||| || |||| | ||||||| ||| Sbjct 137424 TGGGGGTCCTCGCCCACGCACTCCAGCAGCGTCGTCACGGCGCCCTTCATGCGCTCCA 137367 >seq135 Length=88816 Score = 122 bits (134), Expect = 1e-21 Identities = 217/314 (69%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| | || |||| ||| ||||| || |||||||| | || |||||||| Sbjct 29963 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGA 30022 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | || | ||| | ||| || | ||| || | ||| Sbjct 30023 GGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGACGTTGAGGCC 30082 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || || ||| |||||| || | || || ||| || | || |||||||| |||| Sbjct 30083 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTCAAAGTATCGTAGATACCCT 30141 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || |||| |||||||||| || | ||||| || ||| || | |||| || | Sbjct 30142 CAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGCGGGGTAC 30201 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | ||||||||||| ||||| | ||| ||| || || | | |||||| || ||| | Sbjct 30202 CAGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATG 30261 Query 1630364 TGGCGAGCACGCGC 1630377 | | || || ||| Sbjct 30262 TCTCAAGGACACGC 30275 >seq1 Length=401958 Score = 107 bits (118), Expect = 2e-17 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| || ||||| |||||||| || ||| || || ||| | || || |||| Sbjct 276395 AGGACAGCATTGGAGGCACAGTGACGTGTGTCATTCGAAATGTCCCGACTGGACTTGGCG 276336 Query 19105 AGCC-GTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 |||| ||| ||| |||| | |||||| | || ||||||| |||||| || |||||| Sbjct 276335 AGCCCGTGTTTTC-CAAGTTGGAGGCCACACTGGCCCACGGCATGCTTAGCATTCCGGCC 276277 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 || ||||||||||| || ||| ||| |||| Sbjct 276276 ACAAAGGGATTCGAAATCGGCTCCGGATTTG 276246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107021108921163