Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq219 156 7e-32
seq37 118 2e-20
seq16 107 3e-17
seq17 102 1e-15
>seq219
Length=54288
Score = 156 bits (172), Expect = 7e-32
Identities = 237/332 (71%), Gaps = 13/332 (4%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| ||| || || |||||||| || | |||
Sbjct 42779 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCTCTCTT 42838
Query 794400 CTTGAGCCAAAAGATGGCA-CAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458
||||||||| ||||||| || | || | | ||| ||||| ||||| || || ||||
Sbjct 42839 CTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCT-GAAGAAGATACCCTCAACAGCAGCAA 42897
Query 794459 AGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCG 794515
|| | ||||| |||| |||||| || || | | ||| ||||||||| || |
Sbjct 42898 AGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGATGG 42951
Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 794574
||||||| ||||| || | | | || | || || || ||| ||||||| ||| |
Sbjct 42952 CCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGC 43011
Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634
|| | | ||||||||||||||||||||||| || ||||| ||||| |||||||||
Sbjct 43012 G-CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATG 43070
Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|| || || ||||||||| || || |||||
Sbjct 43071 TTCTCCATCATGATCTGGAAACCGTAGAAGCA 43102
Score = 120 bits (132), Expect = 5e-21
Identities = 179/252 (71%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| |||||||| || ||| |||||| |||||||||||||| | |
Sbjct 42457 TGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 42516
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | || ||||||| | | |||| ||||||| ||||
Sbjct 42517 GAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGA 42576
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | ||||||| || ||||| || || ||||||||||| ||| ||| ||||||||
Sbjct 42577 GAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCA 42636
Query 794071 TGCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||| || |||||| | || || | ||| | | ||||| | |||||| ||||||
Sbjct 42637 TGCCCAGAAGAGCGCAA--GGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGC 42694
Query 794129 CTCGATGATGAT 794140
|| |||||||
Sbjct 42695 ATCAGTGATGAT 42706
>seq37
Length=161961
Score = 118 bits (130), Expect = 2e-20
Identities = 89/105 (85%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||| | ||| || |||||||| ||||||||| | || |||||||| ||||||||| | |
Sbjct 85046 CCAATTTCCTTGATATCAAGCCTCTCCTCGATGTCGGCTGCAAGACTGTGGCCAACATGA 84987
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct 84986 TCAAGGGCAAGTCTCCTGAGGAGATCCGCAAGACTTTCAACATCA 84942
>seq16
Length=243159
Score = 107 bits (118), Expect = 3e-17
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||| ||||| |||||||||||| |||||||||| || |||
Sbjct 25456 GTACTTGGTAACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGTTCACCCGGCAG 25515
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
|||||| || |||| ||||||||||| ||||
Sbjct 25516 GATCAGTCGGACGGATGTCTGGATCTCTCGGG 25547
>seq17
Length=239961
Score = 102 bits (112), Expect = 1e-15
Identities = 233/349 (67%), Gaps = 4/349 (1%)
Strand=Plus/Minus
Query 118730 CTCCTGCACCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCC 118789
|||||| | ||| | ||| || | ||| ||| |||||||||| | |||| | |||
Sbjct 137713 CTCCTGGATCTGCAGCCGGCGCGCAAACATCTCGGCGATGCGCGGCAGCTTGGAGATGCC 137654
Query 118790 GATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATG 118849
||||| | ||| | |||||| | |||| |||||| || ||||||| ||| ||
Sbjct 137653 GATGACGGCGTTGTTGGGGATGTAGCCAATGTGCATCTTGCCCATGAAGGGCACCAGGTG 137594
Query 118850 GTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCATCTCG--CCCGACGTC 118907
||||||||||| ||| | | ||||||||| || ||||||||||| | | ||
Sbjct 137593 GTGCTCGCACAGCGAGTACACGTCAATGTCCTTGACAATCACCATCTCGTTGTGGCCCTC 137534
Query 118908 TCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGC 118967
|| |||| |||| || ||| || | | | || ||| ||| |||
Sbjct 137533 CTGG--AAGATGGCGCCGTTGACAATGTCCGAGATGTTCTCCTGGTAGCCCTTGGTGAAG 137476
Query 118968 TCCACCATGGCCTTGGCCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCC 119027
|||| ||||||||| || ||| ||||| ||| |||||||||||| ||||
Sbjct 137475 TCCAGCATGGCCTTTGCGTACCGCTGCGGCGTCGCCAGCAGGCCCTCGCGCTGGGGGTCC 137416
Query 119028 TCGCCCAGACAGACCAGCATGGTCCTCGTGGCGTCGGCCATGCGCGCCA 119076
||||||| || |||||| ||| || |||| | ||||||| |||
Sbjct 137415 TCGCCCACGCACTCCAGCAGCGTCGTCACGGCGCCCTTCATGCGCTCCA 137367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916093327006721
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |