Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq219 156 7e-32 seq37 118 2e-20 seq16 107 3e-17 seq17 102 1e-15 >seq219 Length=54288 Score = 156 bits (172), Expect = 7e-32 Identities = 237/332 (71%), Gaps = 13/332 (4%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| || || |||||||| || | ||| Sbjct 42779 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCTCTCTT 42838 Query 794400 CTTGAGCCAAAAGATGGCA-CAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 ||||||||| ||||||| || | || | | ||| ||||| ||||| || || |||| Sbjct 42839 CTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCT-GAAGAAGATACCCTCAACAGCAGCAA 42897 Query 794459 AGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCG 794515 || | ||||| |||| |||||| || || | | ||| ||||||||| || | Sbjct 42898 AGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGATGG 42951 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 794574 ||||||| ||||| || | | | || | || || || ||| ||||||| ||| | Sbjct 42952 CCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGC 43011 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 || | | ||||||||||||||||||||||| || ||||| ||||| ||||||||| Sbjct 43012 G-CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATG 43070 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || || ||||||||| || || ||||| Sbjct 43071 TTCTCCATCATGATCTGGAAACCGTAGAAGCA 43102 Score = 120 bits (132), Expect = 5e-21 Identities = 179/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| |||||||| || ||| |||||| |||||||||||||| | | Sbjct 42457 TGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 42516 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | || ||||||| | | |||| ||||||| |||| Sbjct 42517 GAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGA 42576 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | ||||||| || ||||| || || ||||||||||| ||| ||| |||||||| Sbjct 42577 GAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCA 42636 Query 794071 TGCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||| || |||||| | || || | ||| | | ||||| | |||||| |||||| Sbjct 42637 TGCCCAGAAGAGCGCAA--GGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGC 42694 Query 794129 CTCGATGATGAT 794140 || ||||||| Sbjct 42695 ATCAGTGATGAT 42706 >seq37 Length=161961 Score = 118 bits (130), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||| | ||| || |||||||| ||||||||| | || |||||||| ||||||||| | | Sbjct 85046 CCAATTTCCTTGATATCAAGCCTCTCCTCGATGTCGGCTGCAAGACTGTGGCCAACATGA 84987 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| || ||||| ||||||||||| || ||||||| Sbjct 84986 TCAAGGGCAAGTCTCCTGAGGAGATCCGCAAGACTTTCAACATCA 84942 >seq16 Length=243159 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| |||||||||||| |||||||||| || ||| Sbjct 25456 GTACTTGGTAACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGTTCACCCGGCAG 25515 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| || |||| ||||||||||| |||| Sbjct 25516 GATCAGTCGGACGGATGTCTGGATCTCTCGGG 25547 >seq17 Length=239961 Score = 102 bits (112), Expect = 1e-15 Identities = 233/349 (67%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 118730 CTCCTGCACCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCC 118789 |||||| | ||| | ||| || | ||| ||| |||||||||| | |||| | ||| Sbjct 137713 CTCCTGGATCTGCAGCCGGCGCGCAAACATCTCGGCGATGCGCGGCAGCTTGGAGATGCC 137654 Query 118790 GATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATG 118849 ||||| | ||| | |||||| | |||| |||||| || ||||||| ||| || Sbjct 137653 GATGACGGCGTTGTTGGGGATGTAGCCAATGTGCATCTTGCCCATGAAGGGCACCAGGTG 137594 Query 118850 GTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCATCTCG--CCCGACGTC 118907 ||||||||||| ||| | | ||||||||| || ||||||||||| | | || Sbjct 137593 GTGCTCGCACAGCGAGTACACGTCAATGTCCTTGACAATCACCATCTCGTTGTGGCCCTC 137534 Query 118908 TCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGC 118967 || |||| |||| || ||| || | | | || ||| ||| ||| Sbjct 137533 CTGG--AAGATGGCGCCGTTGACAATGTCCGAGATGTTCTCCTGGTAGCCCTTGGTGAAG 137476 Query 118968 TCCACCATGGCCTTGGCCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCC 119027 |||| ||||||||| || ||| ||||| ||| |||||||||||| |||| Sbjct 137475 TCCAGCATGGCCTTTGCGTACCGCTGCGGCGTCGCCAGCAGGCCCTCGCGCTGGGGGTCC 137416 Query 119028 TCGCCCAGACAGACCAGCATGGTCCTCGTGGCGTCGGCCATGCGCGCCA 119076 ||||||| || |||||| ||| || |||| | ||||||| ||| Sbjct 137415 TCGCCCACGCACTCCAGCAGCGTCGTCACGGCGCCCTTCATGCGCTCCA 137367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916093327006721