Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq115 105 5e-17 seq14 89.7 4e-12 >seq115 Length=99299 Score = 105 bits (116), Expect = 5e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 131166 AAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTA 131225 |||| ||| |||||||||| || || || ||||||||||||||| ||||||| || || | Sbjct 63108 AAATCAAAGTTGTAGTAGCAACTATTGCTTTTGGTATGGGTATTGATAAACCAGACGTCA 63049 Query 131226 GAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTA 131285 || ||||||| || | || ||| |||| | ||||| ||||||||||||| ||| Sbjct 63048 GATTTGTTATGCACCATGGCATTCCGAAGAGCTTAGAAGGCTATTATCAAGAAACTGGCC 62989 Query 131286 GAGCAGGTCGTGATGG 131301 | || || || ||||| Sbjct 62988 GTGCGGGGCGAGATGG 62973 >seq14 Length=252920 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | |||||||||||||||||| ||||| |||| ||| | || || Sbjct 243803 GAGTTTTTCTTCCACGCCATGGCTGGTCGTGAAGGTCTTATTGATACTGCTGTCAAGACA 243862 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| |||||||| || || ||| || ||||| || |||||| | || || Sbjct 243863 GCTGAGACTGGTTACATCCAGAGACGTCTCGTCAAAGCTCTGGAAGATCTCAATGCTCAA 243922 Query 435253 TATGATGGTACAGT 435266 || ||||| || || Sbjct 243923 TACGATGGAACCGT 243936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740559751181214