Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq219 111 2e-19
seq38 87.8 2e-12
>seq219
Length=54288
Score = 111 bits (122), Expect = 2e-19
Identities = 354/535 (66%), Gaps = 13/535 (2%)
Strand=Plus/Minus
Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256
|||||||| | || | ||| || || | || || |||| ||| ||||| | || ||||
Sbjct 42999 TCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGA 42940
Query 50257 CTaaaaacaaaaaa-CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGT 50315
| |||| || ||| ||||| || | ||| | || || ||||| ||||| |||
Sbjct 42939 TCCAGGACAAGAACTCTTCCTTTGCCC-AGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGT 42881
Query 50316 GTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCC 50375
| || || ||| |||||| |||| || | | || | ||| | |||||
Sbjct 42880 ATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCT 42821
Query 50376 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50435
|| || || || ||||||| | || || || ||||| || ||||||| ||||||||
Sbjct 42820 GGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCT 42761
Query 50436 TGTTTGTACTACAATACGCGCGTAAATGAAAAATT--ATCATACGAAACAATTTTGGACA 50493
|| || || || | | | | | || ||| | || | || | || ||||
Sbjct 42760 TGCCTG--CTCCACT-CTCACCTGAA-GAACCGCGCCAGCA-AGGAGATTATCCGTGACA 42706
Query 50494 TGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG-GCA 50552
| ||| || |||||| ||||| | ||||| || || || ||| | ||| || ||
Sbjct 42705 TCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCT-CCCTTGCGCT 42647
Query 50553 TTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG 50612
| ||||||||||||| || ||||| ||||||||||||||||||| || | ||
Sbjct 42646 CTTCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTG 42587
Query 50613 -TTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAA 50671
|||| || || ||| | ||| ||| || | ||||||||| |||||| |
Sbjct 42586 CTTGTCGC-TCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGA 42528
Query 50672 TAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50726
||||| || ||| ||||| || ||||| ||||| | ||||| ||||| |||
Sbjct 42527 GAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTAC 42473
>seq38
Length=159530
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241
||||| || || | ||| | ||| || |||| || || || || |||||||| |||
Sbjct 139237 TGGCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 139178
Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301
|||| || | |||||| || || ||||||||| |||| ||||| ||||| || ||
Sbjct 139177 CTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 139118
Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361
|| || || || ||||| || ||| ||| | | || | || || | | ||
Sbjct 139117 GGAATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCC 139058
Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| || | || | ||||||||||| || || || ||||| || ||||||
Sbjct 139057 ACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCATA 139007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488535212314800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |