Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq219 176 4e-39
seq38 131 2e-25
seq5 122 8e-23
seq287 104 2e-17
>seq219
Length=54288
Score = 176 bits (194), Expect = 4e-39
Identities = 351/517 (68%), Gaps = 5/517 (1%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| |||||||||||| || ||||| || ||||| || ||||| ||| |||||||| |
Sbjct 42470 CTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATGTTCTC 42529
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
|||||| || || |||||| | || || ||| | || | || |||||
Sbjct 42530 CATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGAGAGCGACAAGCAG 42589
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530
|| || || |||||||||||||||| ||| | |||||||||||||| | ||
Sbjct 42590 ACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGAAGAGC 42649
Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590
|| | ||| || || ||||||| ||| || || || || ||| ||| |
Sbjct 42650 GCAAGGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATGTC 42709
Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649
| ||| | | || || |||| | | || | || | |||||| ||||
Sbjct 42710 ACGGATAATCT--CCTTGCTGGCGCGGTTC--TTCAGGTGAGAGTGGAGCAGGCAAGCAA 42765
Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709
|||| |||||||| |||||||| || || || ||||||||| || ||||| || ||||
Sbjct 42766 AGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCA 42825
Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769
||| ||| || |||||| |||| |||| ||||||| || ||||| | ||||
Sbjct 42826 TGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCT 42885
Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829
| || |||||||| || | |||| ||| || | | ||||| | ||||||||
Sbjct 42886 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACT 42945
Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866
| ||||||||||||||||| ||||| | ||| || ||
Sbjct 42946 TGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGAT 42982
>seq38
Length=159530
Score = 131 bits (144), Expect = 2e-25
Identities = 156/209 (75%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||| ||||| || ||||| ||| || || | | | || |||||
Sbjct 138700 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCA-TCTTCGAG 138642
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| ||| | || | ||||||||||| ||||| ||||| |||||||| |||
Sbjct 138641 CTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGAT 138582
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | || | ||||||| | |||||| |||| ||||| ||| |||||
Sbjct 138581 CTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 138522
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662
||| || || || ||||| || |||||||
Sbjct 138521 GGTGAGGGTCTTGACGAAGATTTGCATGG 138493
Score = 114 bits (126), Expect = 1e-20
Identities = 140/189 (74%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| ||| || || || || ||||| |||||||| |
Sbjct 138976 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCG--TCCTCAAGCTGCTTAC 138919
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | ||||| ||||||||||| |||||||| || |||||||| |||||| ||
Sbjct 138918 CAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 138859
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | || |||| | ||| || || | |||| ||| ||||||||||| |
Sbjct 138858 TGACGTTGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGG 138799
Query 133642 TTTTTACGA 133650
|||| ||||
Sbjct 138798 TTTTGACGA 138790
Score = 100 bits (110), Expect = 3e-16
Identities = 148/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
|| || | |||| ||| ||||| || ||||| |||| || || |||| ||| || |
Sbjct 139213 AAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT--ACGACCGTCTTCCA 139156
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
||||||| || || | || || ||||||||||| || || || || |||||||| ||
Sbjct 139155 GCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGA 139096
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||||| |||| | || | || || | | |||||| || | |||| || ||||
Sbjct 139095 TCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTGC 139036
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| | ||| || ||||| ||||||||
Sbjct 139035 CGGTTAAAGTCTTGACGAAGATCTGCAT 139008
>seq5
Length=314554
Score = 122 bits (134), Expect = 8e-23
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| |
Sbjct 52352 GGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 52410
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | ||||||||||| || || ||||| |||||||| |||||| ||
Sbjct 52411 CAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 52470
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||||||| | |||||| || | ||||| || || || || || |
Sbjct 52471 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 52530
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 52531 TCTTGACGAAAATCTGCAT 52549
>seq287
Length=39990
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | |||||||| || || || || || ||||||
Sbjct 4510 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTG 4569
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||||| || ||| || || | ||||| |
Sbjct 4570 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 4629
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 4630 GTCTTGCCCGTCAGGGTCTTCACGAAA 4656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483412104468360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |