Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq219 176 4e-39 seq38 131 2e-25 seq5 122 8e-23 seq287 104 2e-17 >seq219 Length=54288 Score = 176 bits (194), Expect = 4e-39 Identities = 351/517 (68%), Gaps = 5/517 (1%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||||||| || ||||| || ||||| || ||||| ||| |||||||| | Sbjct 42470 CTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATGTTCTC 42529 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 |||||| || || |||||| | || || ||| | || | || ||||| Sbjct 42530 CATAAAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTTCCGAGAGCGACAAGCAG 42589 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 || || || |||||||||||||||| ||| | |||||||||||||| | || Sbjct 42590 ACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGAAGAGC 42649 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || | ||| || || ||||||| ||| || || || || ||| ||| | Sbjct 42650 GCAAGGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATGTC 42709 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 | ||| | | || || |||| | | || | || | |||||| |||| Sbjct 42710 ACGGATAATCT--CCTTGCTGGCGCGGTTC--TTCAGGTGAGAGTGGAGCAGGCAAGCAA 42765 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||| |||||||| |||||||| || || || ||||||||| || ||||| || |||| Sbjct 42766 AGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCA 42825 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| ||| || |||||| |||| |||| ||||||| || ||||| | |||| Sbjct 42826 TGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCT 42885 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829 | || |||||||| || | |||| ||| || | | ||||| | |||||||| Sbjct 42886 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACT 42945 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 | ||||||||||||||||| ||||| | ||| || || Sbjct 42946 TGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGAT 42982 >seq38 Length=159530 Score = 131 bits (144), Expect = 2e-25 Identities = 156/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || || | | | || ||||| Sbjct 138700 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCA-TCTTCGAG 138642 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || | ||||||||||| ||||| ||||| |||||||| ||| Sbjct 138641 CTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGAT 138582 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||||||| | |||||| |||| ||||| ||| ||||| Sbjct 138581 CTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 138522 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||| || || || ||||| || ||||||| Sbjct 138521 GGTGAGGGTCTTGACGAAGATTTGCATGG 138493 Score = 114 bits (126), Expect = 1e-20 Identities = 140/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| ||| || || || || ||||| |||||||| | Sbjct 138976 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCG--TCCTCAAGCTGCTTAC 138919 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| |||||||| || |||||||| |||||| || Sbjct 138918 CAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 138859 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| | ||| || || | |||| ||| ||||||||||| | Sbjct 138858 TGACGTTGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGG 138799 Query 133642 TTTTTACGA 133650 |||| |||| Sbjct 138798 TTTTGACGA 138790 Score = 100 bits (110), Expect = 3e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | |||| ||| ||||| || ||||| |||| || || |||| ||| || | Sbjct 139213 AAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT--ACGACCGTCTTCCA 139156 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || || | || || ||||||||||| || || || || |||||||| || Sbjct 139155 GCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGA 139096 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| |||| | || | || || | | |||||| || | |||| || |||| Sbjct 139095 TCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTGC 139036 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| | ||| || ||||| |||||||| Sbjct 139035 CGGTTAAAGTCTTGACGAAGATCTGCAT 139008 >seq5 Length=314554 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| | Sbjct 52352 GGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 52410 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 52411 CAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 52470 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 52471 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 52530 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 52531 TCTTGACGAAAATCTGCAT 52549 >seq287 Length=39990 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || || || || |||||| Sbjct 4510 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTG 4569 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||||| | Sbjct 4570 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 4629 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 4630 GTCTTGCCCGTCAGGGTCTTCACGAAA 4656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412104468360