Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq219 149 6e-31
seq38 89.7 5e-13
seq5 89.7 5e-13
>seq219
Length=54288
Score = 149 bits (164), Expect = 6e-31
Identities = 350/515 (68%), Gaps = 15/515 (3%)
Strand=Plus/Minus
Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820
|| ||| ||||||| |||||| |||||||||| ||||||||| || | ||| | | |
Sbjct 42979 CCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCC 42920
Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG-GCAGT-T 46878
| ||| |||| | || || || || || || || | | || ||| | | || |
Sbjct 42919 TTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGG--TATCTTCTTCAGCGGAGCCT 42862
Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938
||||| |||| || | | || | | ||| | ||||| || ||||| ||| ||||
Sbjct 42861 TTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACG 42802
Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACG 46997
|| | ||||| || ||||| || || ||||| |||||||| || || || | | |
Sbjct 42801 AGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCT----CCACTCT 42746
Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAG 47056
| | |||| | | | ||| | |||| ||| ||| | | || || || ||
Sbjct 42745 CACCTGAAGAACCGCGCCAGCAAGGAGATTATCCGTGA-CATCATCACTGATGCCGTCAG 42687
Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116
||||| ||||||| || |||| ||| || || ||| | |||||||||||||| ||
Sbjct 42686 AATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGC-CA 42628
Query 47117 GTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC 47175
|| ||| | || ||||||||||| || ||||||||| | || |||||| |
Sbjct 42627 ACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACG 42568
Query 47176 CGAA-ATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGC 47234
||| || | | | ||| || || ||||| |||||| | |||||||| || | |||
Sbjct 42567 AGAAGATCTACAAGTCCTC-CAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGC 42509
Query 47235 AAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
|| ||||| || |||||||| || ||||| |||||
Sbjct 42508 AAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 42474
>seq38
Length=159530
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| || | |||||| || | | | ||| || || |||||||||||||||| |||
Sbjct 139229 ACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 139170
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||||| ||||| ||||| | | |||| |||||||| || || || || || ||
Sbjct 139169 ACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACC 139110
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || ||| ||| | | || | ||||| | | |||||| || |
Sbjct 139109 CTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAG 139050
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || | ||| || | ||| ||||||||
Sbjct 139049 TGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008
Score = 82.4 bits (90), Expect = 7e-11
Identities = 152/223 (68%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | |||||| || | | | ||||| || || |||||||||||| || ||
Sbjct 138716 ACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 138657
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||||||||| || |||| |||| | ||||| || || ||||| |||||
Sbjct 138656 CCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 138597
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || |||| | || | || |||| | |||||| ||||
Sbjct 138596 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAG 138537
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || || || || || || | ||| || ||||||
Sbjct 138536 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 138494
>seq5
Length=314554
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||||| |||| || | | | ||||| || || |||||||||||||||| |||
Sbjct 52328 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 52387
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| |||||||| ||||| | |||| | ||||| || || || || |||||
Sbjct 52388 GCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 52447
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || | | || | || |||| | |||||| || |
Sbjct 52448 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 52507
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || || || || || | ||||||||||||
Sbjct 52508 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476602626956040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |