Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq219 149 6e-31 seq38 89.7 5e-13 seq5 89.7 5e-13 >seq219 Length=54288 Score = 149 bits (164), Expect = 6e-31 Identities = 350/515 (68%), Gaps = 15/515 (3%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| ||||||| |||||| |||||||||| ||||||||| || | ||| | | | Sbjct 42979 CCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCC 42920 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG-GCAGT-T 46878 | ||| |||| | || || || || || || || | | || ||| | | || | Sbjct 42919 TTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGG--TATCTTCTTCAGCGGAGCCT 42862 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 ||||| |||| || | | || | | ||| | ||||| || ||||| ||| |||| Sbjct 42861 TTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACG 42802 Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACG 46997 || | ||||| || ||||| || || ||||| |||||||| || || || | | | Sbjct 42801 AGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCT----CCACTCT 42746 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAG 47056 | | |||| | | | ||| | |||| ||| ||| | | || || || || Sbjct 42745 CACCTGAAGAACCGCGCCAGCAAGGAGATTATCCGTGA-CATCATCACTGATGCCGTCAG 42687 Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 ||||| ||||||| || |||| ||| || || ||| | |||||||||||||| || Sbjct 42686 AATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGC-CA 42628 Query 47117 GTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC 47175 || ||| | || ||||||||||| || ||||||||| | || |||||| | Sbjct 42627 ACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACG 42568 Query 47176 CGAA-ATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGC 47234 ||| || | | | ||| || || ||||| |||||| | |||||||| || | ||| Sbjct 42567 AGAAGATCTACAAGTCCTC-CAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGC 42509 Query 47235 AAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || ||||| || |||||||| || ||||| ||||| Sbjct 42508 AAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 42474 >seq38 Length=159530 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | |||||| || | | | ||| || || |||||||||||||||| ||| Sbjct 139229 ACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 139170 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| ||||| ||||| | | |||| |||||||| || || || || || || Sbjct 139169 ACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACC 139110 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||| ||| | | || | ||||| | | |||||| || | Sbjct 139109 CTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAG 139050 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || | ||| || | ||| |||||||| Sbjct 139049 TGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||| || | | | ||||| || || |||||||||||| || || Sbjct 138716 ACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 138657 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||| || |||| |||| | ||||| || || ||||| ||||| Sbjct 138656 CCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 138597 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || |||| | |||||| |||| Sbjct 138596 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAG 138537 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || || | ||| || |||||| Sbjct 138536 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 138494 >seq5 Length=314554 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||||||| ||| Sbjct 52328 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 52387 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | |||| | ||||| || || || || ||||| Sbjct 52388 GCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 52447 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 52448 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 52507 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 52508 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476602626956040