Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq56 116 4e-21 >seq56 Length=137465 Score = 116 bits (128), Expect = 4e-21 Identities = 190/271 (70%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAA 147290 ||||||||| ||||||| ||| |||| | || | ||| || || ||| ||||| Sbjct 86731 CAGCTGGTCGACGCCCTTGCCGGCGTAATCTGCCTTTGCGTCGACATAGTCGGCGCCAAA 86790 Query 147291 GTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCC 147350 ||||| ||||||||||||||| || || || ||||||||| | | ||||| | |||| Sbjct 86791 GTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGCGTG-AGCC 86849 Query 147351 CG-CCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409 || | | | || |||||| ||||||||| | |||||||||| || || | || Sbjct 86850 CGACGCTGTCAAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGC 86909 Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCC 147469 ||| | | ||| ||| |||| |||||||||||||||||| | | || | | Sbjct 86910 TGAGGGCGGTGGAGGAGGTGTTGCCCTCGATGAACCAGAGCAGCTCGGCGATGACGGCGC 86969 Query 147470 TCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 ||||| | ||||||||| || ||||| Sbjct 86970 GGAGGAAGACTCGCTTGGTGGTGAGGAGGGG 87000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583477504509600