Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq219 210 3e-48
seq17 109 8e-18
seq135 96.9 5e-14
>seq219
Length=54288
Score = 210 bits (232), Expect = 3e-48
Identities = 361/510 (71%), Gaps = 18/510 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||| ||||| ||||||||||||||| | || |
Sbjct 43316 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 43258
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | || | | ||||| ||| ||| ||| |||||| | ||||||
Sbjct 43257 TGTCCAAGGATTTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 43198
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||| ||||| ||| || ||| || ||||| || ||||||||||| ||
Sbjct 43197 CTCACATCCTGGCCTTCTTT-GCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAG 43139
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
|| || | ||||| || | || ||||| || | || ||||| |||||||||
Sbjct 43138 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 43079
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| || || ||||| || || |||||||||||||||||||| |
Sbjct 43078 ATGGAGAACATCCACTCCGAGACATACTCTCTGCTCATCGACACCTACGTCAAGGAGCAC 43019
Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130
| || | ||| ||||||| ||| || || || | || | | | || |||||
Sbjct 43018 AGCCAG-CGCACCTACCTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGC 42960
Query 1456131 CGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187
||| ||||| || ||||||||| ||||| | ||| | ||||||| |||| |||
Sbjct 42959 CGAGTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGTCTC 42905
Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTTTG 1456245
|| | |||||| || || ||||| ||||| ||| | | || | || | ||||||| ||
Sbjct 42904 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTC-AGCGGAGCCTTTGCCTCCATCTTCTG 42846
Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||||| | || |||||||| |||||
Sbjct 42845 GCTCAAGAAGAGAGGTCTCATGCCTGGTCT 42816
Score = 102 bits (112), Expect = 1e-15
Identities = 180/255 (71%), Gaps = 8/255 (3%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| || |||||| |||||| | ||||| | | ||| | || || | |||
Sbjct 42706 ATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCC--TTGCG 42649
Query 1456583 CTCATC--GGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640
||| || ||||||||||||| | || ||| ||||||||||| ||| || ||||| ||
Sbjct 42648 CTCTTCTGGGCATGAACGCCAAC-CTGATGAAGCAGTACATTGAGTTT-GTTGCCGATCG 42591
Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700
||||| | || ||||| || ||||| |||| | | ||||||| || | |
Sbjct 42590 TCTGCTTGTCGCTCTCGGAAACG-AGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTA 42532
Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759
||||| || || || | |||||||||||||| |||||| || || |||||||||
Sbjct 42531 TGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACC 42472
Query 1456760 CCAAGGCCGGCGTCA 1456774
||||| || ||||
Sbjct 42471 AGAAGGCTGGTGTCA 42457
>seq17
Length=239961
Score = 109 bits (120), Expect = 8e-18
Identities = 218/323 (67%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 2133382 TGGCGCGCATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATGTGACGC 2133441
||| ||||||| | |||| || ||| |||||| ||| |||||||||| ||
Sbjct 137367 TGGAGCGCATGAAGGGCGCCGTGACGACGCTGCTGGAGTGCGTGGGCGAGGACCCCCAGC 137426
Query 2133442 GCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCG 2133501
|||||||||| |||| || || ||| || ||||||||| |||| ||| |
Sbjct 137427 GCGAGGGCCTGCTGGCGACGCCGCAGCGGTACGCAAAGGCCATGCTGGACTTCACCAAGG 137486
Query 2133502 GCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGACG 2133561
|| | | || | | | ||| ||| ||||||| |||| | |||| |||
Sbjct 137487 GCTACCAGGAGAACATCTCGGACATTGTCAACGGCGCCATCTTCCAGGAGGGCCACAACG 137546
Query 2133562 AGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCT 2133621
||||||||| || || |||||| | | ||| ||||||||||||||||| ||||||
Sbjct 137547 AGATGGTGATTGTCAAGGACATTGACGTGTACTCGCTGTGCGAGCACCACCTGGTGCCCT 137606
Query 2133622 TTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGA 2133681
| || |||||| ||| | |||||| | ||| | ||||||| | ||||
Sbjct 137607 TCATGGGCAAGATGCACATTGGCTACATCCCCAACAACGCCGTCATCGGCATCTCCAAGC 137666
Query 2133682 TCCCGCGCATCGTCGACATGTTT 2133704
| |||||||||| ||| ||||||
Sbjct 137667 TGCCGCGCATCGCCGAGATGTTT 137689
>seq135
Length=88816
Score = 96.9 bits (106), Expect = 5e-14
Identities = 197/290 (68%), Gaps = 2/290 (1%)
Strand=Plus/Minus
Query 259894 CATGTCGCAGCAG-TTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952
|||||| ||||| || || ||| ||| | ||||| ||||| || || || || ||||
Sbjct 30251 CATGTC-CAGCAAATTCTTTACCCATGCGTCCCCCACCCTCTTCAACGCTGGTACCCCGC 30193
Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012
| ||| || || ||||| || | |||||||||| ||| || ||||| ||||
Sbjct 30192 AAGCTCAGCTCTCCTCATGCTTCTTGGTTGACATGAAGGACGACAGCATTGAGGGTATCT 30133
Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072
| || || | ||| || || | || |||||| ||| || || ||||| | ||
Sbjct 30132 ACGATACTTTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTCAACG 30073
Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132
||| | || ||| | ||| | || | || ||||| ||||| ||||||||
Sbjct 30072 TCCACCGTATCCGTGCCACAGGCTCTTATATCGCCGGCACAAACGGTACCTCCAACGGTA 30013
Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
| | ||||||||||| || || ||| |||| || | ||||||||||||
Sbjct 30012 TCATCCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTCGACCAG 29963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177672405805118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |