Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq219 210 3e-48 seq17 109 8e-18 seq135 96.9 5e-14 >seq219 Length=54288 Score = 210 bits (232), Expect = 3e-48 Identities = 361/510 (71%), Gaps = 18/510 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||||||||||||| | || | Sbjct 43316 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 43258 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 43257 TGTCCAAGGATTTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 43198 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| || ||| || ||||| || ||||||||||| || Sbjct 43197 CTCACATCCTGGCCTTCTTT-GCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAG 43139 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| || | || ||||| ||||||||| Sbjct 43138 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 43079 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || ||||| || || |||||||||||||||||||| | Sbjct 43078 ATGGAGAACATCCACTCCGAGACATACTCTCTGCTCATCGACACCTACGTCAAGGAGCAC 43019 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | || | ||| ||||||| ||| || || || | || | | | || ||||| Sbjct 43018 AGCCAG-CGCACCTACCTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGC 42960 Query 1456131 CGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 ||| ||||| || ||||||||| ||||| | ||| | ||||||| |||| ||| Sbjct 42959 CGAGTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGTCTC 42905 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTTTG 1456245 || | |||||| || || ||||| ||||| ||| | | || | || | ||||||| || Sbjct 42904 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTC-AGCGGAGCCTTTGCCTCCATCTTCTG 42846 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||| | || |||||||| ||||| Sbjct 42845 GCTCAAGAAGAGAGGTCTCATGCCTGGTCT 42816 Score = 102 bits (112), Expect = 1e-15 Identities = 180/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||| |||||| | ||||| | | ||| | || || | ||| Sbjct 42706 ATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCC--TTGCG 42649 Query 1456583 CTCATC--GGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| || ||||||||||||| | || ||| ||||||||||| ||| || ||||| || Sbjct 42648 CTCTTCTGGGCATGAACGCCAAC-CTGATGAAGCAGTACATTGAGTTT-GTTGCCGATCG 42591 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||| | || ||||| || ||||| |||| | | ||||||| || | | Sbjct 42590 TCTGCTTGTCGCTCTCGGAAACG-AGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTA 42532 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 ||||| || || || | |||||||||||||| |||||| || || ||||||||| Sbjct 42531 TGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACC 42472 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 42471 AGAAGGCTGGTGTCA 42457 >seq17 Length=239961 Score = 109 bits (120), Expect = 8e-18 Identities = 218/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 2133382 TGGCGCGCATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATGTGACGC 2133441 ||| ||||||| | |||| || ||| |||||| ||| |||||||||| || Sbjct 137367 TGGAGCGCATGAAGGGCGCCGTGACGACGCTGCTGGAGTGCGTGGGCGAGGACCCCCAGC 137426 Query 2133442 GCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCG 2133501 |||||||||| |||| || || ||| || ||||||||| |||| ||| | Sbjct 137427 GCGAGGGCCTGCTGGCGACGCCGCAGCGGTACGCAAAGGCCATGCTGGACTTCACCAAGG 137486 Query 2133502 GCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGACG 2133561 || | | || | | | ||| ||| ||||||| |||| | |||| ||| Sbjct 137487 GCTACCAGGAGAACATCTCGGACATTGTCAACGGCGCCATCTTCCAGGAGGGCCACAACG 137546 Query 2133562 AGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCT 2133621 ||||||||| || || |||||| | | ||| ||||||||||||||||| |||||| Sbjct 137547 AGATGGTGATTGTCAAGGACATTGACGTGTACTCGCTGTGCGAGCACCACCTGGTGCCCT 137606 Query 2133622 TTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGA 2133681 | || |||||| ||| | |||||| | ||| | ||||||| | |||| Sbjct 137607 TCATGGGCAAGATGCACATTGGCTACATCCCCAACAACGCCGTCATCGGCATCTCCAAGC 137666 Query 2133682 TCCCGCGCATCGTCGACATGTTT 2133704 | |||||||||| ||| |||||| Sbjct 137667 TGCCGCGCATCGCCGAGATGTTT 137689 >seq135 Length=88816 Score = 96.9 bits (106), Expect = 5e-14 Identities = 197/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 259894 CATGTCGCAGCAG-TTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||||| || || ||| ||| | ||||| ||||| || || || || |||| Sbjct 30251 CATGTC-CAGCAAATTCTTTACCCATGCGTCCCCCACCCTCTTCAACGCTGGTACCCCGC 30193 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 | ||| || || ||||| || | |||||||||| ||| || ||||| |||| Sbjct 30192 AAGCTCAGCTCTCCTCATGCTTCTTGGTTGACATGAAGGACGACAGCATTGAGGGTATCT 30133 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | || || | ||| || || | || |||||| ||| || || ||||| | || Sbjct 30132 ACGATACTTTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTCAACG 30073 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || ||| | ||| | || | || ||||| ||||| |||||||| Sbjct 30072 TCCACCGTATCCGTGCCACAGGCTCTTATATCGCCGGCACAAACGGTACCTCCAACGGTA 30013 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | | ||||||||||| || || ||| |||| || | |||||||||||| Sbjct 30012 TCATCCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTCGACCAG 29963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177672405805118