Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq5 129 5e-25
seq38 125 6e-24
>seq5
Length=314554
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||| || | ||| |||||| || |||||||| ||| |
Sbjct 52323 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 52382
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || ||||||||||| || || ||||| ||||||||||||| |||
Sbjct 52383 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 52442
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || |||||||||| |||||| ||| | |||| | | |||||| || |||||
Sbjct 52443 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 52501
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| | |||||||| || ||||| | || || || || ||||||||
Sbjct 52502 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549
>seq38
Length=159530
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | || |||||||| || |||||||| ||| |
Sbjct 139234 CCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 139175
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| |||||||||||||| ||||| || | ||||||||||| | |||
Sbjct 139174 AGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 139115
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| ||||||| || | | | | | || || || ||||||
Sbjct 139114 ATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACC 139055
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || || ||||| || || || ||||||||
Sbjct 139054 TCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || | || || |||||||| || || ||
Sbjct 138686 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAA 138627
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||||| || |||||||||| |||||| ||||| | |
Sbjct 138626 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 138567
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || |||||||| | ||||| || || || || | || || ||
Sbjct 138566 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 138507
Query 35725 AAATATCTGCAT 35736
|| || |||||
Sbjct 138506 GAAGATTTGCAT 138495
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | ||| |||||| || |||||||| |||| |
Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| || ||||||||||| || || || | ||||||||||| | |||
Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | |||||||||| |||||| ||| | |||| | | || ||| || || ||
Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCGGATGACTCGAC 138828
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
||| | ||||| || || || |||| ||||| ||
Sbjct 138827 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGAC 138792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450785491350120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |