Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5 122 9e-23 seq38 116 4e-21 seq287 89.7 5e-13 >seq5 Length=314554 Score = 122 bits (134), Expect = 9e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || || || ||||| || ||||||||||||| | |||| | Sbjct 52332 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 52391 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || || || ||||| |||||||| || || || ||||| || Sbjct 52392 CCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 52451 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| || || || Sbjct 52452 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 52511 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | || || |||||||| ||||| ||| Sbjct 52512 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 52553 >seq38 Length=159530 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| ||||| || |||||||||||| | || | || |||||||| Sbjct 138698 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCGAGCTG 138639 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||| |||||||| || || || ||||| || || || || || || Sbjct 138638 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 138579 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | |||||||| || ||||| ||||| || ||||| || ||||| Sbjct 138578 GGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 138519 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 138518 GAGGGTCTTGACGAAGATTTGCAT 138495 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||| ||||| || ||||||||||||| | ||| || ||| || ||||| Sbjct 139211 GTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGCTG 139152 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| || | ||||||||| || || || || || || || || || || || Sbjct 139151 CTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTT 139092 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | |||||| ||| | || || || || ||||| || || || || || || ||||| Sbjct 139091 TGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTGCCGGT 139032 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || ||||| || ||||| Sbjct 139031 TAAAGTCTTGACGAAGATCTGCAT 139008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | || | ||| || ||||| Sbjct 138983 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTG 138924 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | ||||||||| || || || || || || || || || || || Sbjct 138923 CTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 138864 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || ||||| || || || || ||||| ||||| || ||||| Sbjct 138863 GGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 138804 Query 134690 TAAAGTTTTAACGA 134703 | ||||| |||| Sbjct 138803 CAGGGTTTTGACGA 138790 >seq287 Length=39990 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | || |||||||| ||||| || || | Sbjct 4475 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 4534 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| ||||||||||| || || || || || || || || || || ||||| || Sbjct 4535 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4594 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || || || || || || ||||| || || || | || || |||| Sbjct 4595 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4654 Query 134704 AAATTT--GCATT 134714 || ||| ||||| Sbjct 4655 AACTTTTCGCATT 4667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389309146280