Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq135 140 4e-28 >seq135 Length=88816 Score = 140 bits (154), Expect = 4e-28 Identities = 406/615 (66%), Gaps = 14/615 (2%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| || | ||| || ||||| ||| ||| |||||||| || || || Sbjct 29558 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATGAA 29617 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || ||||||| ||| |||| | || | ||||| | ||| | | ||| || Sbjct 29618 GGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCACAGCTTCTGAGCTCGGAT 29677 Query 69471 TACGGTCTTGTAACG-CTTCTCT--TTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525 |||||| || | || || || ||||| || | || | |||| |||||||| Sbjct 29678 A---GTCTTGCGACCACGTCCCTCCTTCTCATACTTCTCATACAGAGCC--TCGAATTC- 29731 Query 69526 TCTCCCCAAA-CA-TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583 ||| ||| | || ||| | | ||||| |||||||| || |||||||| | ||| | Sbjct 29732 -CTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCATTAGGGCACATCAAAGTCCAATCCA 29790 Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 | | || || || ||||| || ||||| || ||||| ||||| | || || || | Sbjct 29791 AGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCAC 29850 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 || | ||||| || || || || || || || ||||| | | ||| | Sbjct 29851 GGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGG 29910 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 ||||| || || || || || || | | | || || || || ||||| ||||| || | Sbjct 29911 CGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTTCCACCCTGGTCGA 29970 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 ||||||||||||||| || |||| | ||||| || || ||||| || || |||| | Sbjct 29971 CGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGAGGTACCGT 30030 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 |||| || | |||||| ||| | || || ||| | || || || || | Sbjct 30031 TTGTGCCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGACGTTGAGGCCGATACCAC 30090 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 | ||||| || || || | ||||| ||||| || || || |||||||| ||||| | Sbjct 30091 CAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGT 30150 Query 69944 CATCTATCATGTTAA 69958 | || |||||| || Sbjct 30151 CGTCCTTCATGTCAA 30165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896444227960