Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq135 235 7e-57 seq219 104 3e-17 >seq135 Length=88816 Score = 235 bits (260), Expect = 7e-57 Identities = 976/1513 (65%), Gaps = 59/1513 (4%) Strand=Plus/Plus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||||| ||||| || || ||| | || | |||||||||| | ||||| || Sbjct 28910 GTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 28969 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 ||||| || || || ||||||||||| || | ||| ||| || ||||| || || | Sbjct 28970 CTCAAAACACTCGTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCGAC 29029 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--- 110844 | | ||||| |||||||| | |||||| || | |||||||| |||||| || Sbjct 29030 GAGCAAGCTGTTGCGAAGACCGTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCCCA 29089 Query 110845 ---GTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGC 110901 || | || ||||| | |||||||||||| | ||||| | |||| || || Sbjct 29090 CAGGTCGGTGGGCTTG------ACATCCCACATGTCATATTGAAGAATGCCTTCAGAGGC 29143 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA-ATTCACAGCTCGCCT 110960 ||| || |||| || | ||| | ||||| | | || | | || || |||| Sbjct 29144 GGGTGATCCCTTGAATGACGAATAAGGACCTTCAACCTTGGCAATCTCCATAG-AGGCCT 29202 Query 110961 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 | |||| || || || ||||| |||||||| | |||| ||| ||||| || Sbjct 29203 CAAGGGCAGCATGGTAGATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAGCTTCGGGTG 29262 Query 111021 AATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 | || || | | || ||| | || || |||| || || || || ||||| | |||| Sbjct 29263 ATTCGAA-GGGAAGACGCAGAGCAAGGAAAGCATCAGCAAGTCCCTGGACACCAACACCA 29321 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || |||| ||| || | || || || || || ||| || || | || || Sbjct 29322 ATGGGTCGGTGACGGCTGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAGTTCACATCG 29381 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||||| || || | ||| | |||||| | ||| ||||| |||| | | ||| Sbjct 29382 ATGATGCGGTTGAGGTTACGGACAACCACCTTTGTAACTTCGTGAAGCTTTTTAAAGTCA 29441 Query 111200 AAAGTGCGAGTCTCTTCATT------GACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 | | || |||| || |||| | || || || | || ||||| ||| Sbjct 29442 TA-----GCATC-CTTCGTTGTAGTCGACAAAAGCAGGGAGAGCCAAAGAGGCCAAGTTG 29495 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 || ||||| |||||| | | |||||| | ||| || || || | |||||| || Sbjct 29496 CAGACAGCGACCTCATCAGGCGCAGAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTG 29555 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || |||| ||||| ||||| ||||| |||||| |||||||||||||||| Sbjct 29556 CGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATG 29615 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGG 111432 |||| | || ||||| ||||| | | || |||| | ||| | | || | ||| | Sbjct 29616 AAGGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCACAGCTTCTG-AGCTCG 29674 Query 111433 TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 | | | | | ||||||||| ||| ||||| || || || || || ||||| Sbjct 29675 GATAGTCTTGCGACCACGTCCCTCCTTCTCATACTTCTCATACAGAGCCTCGAATTCCTC 29734 Query 111493 ACCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA 111550 ||| || ||| | || || || || || | || || | | || ||| | ||| Sbjct 29735 -GCCATAGCAGTCAGCAAGGCCAGG-GCATTCATTAGGGCACATCAAAGTCCAAT--CCA 29790 Query 111551 CCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 ||| ||| || ||||||||||| || || || ||||| || | || || || | Sbjct 29791 AGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCAC 29850 Query 111609 -TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 ||| || ||||||| | || ||||| || | ||||||||||| | || ||| Sbjct 29851 GGGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCG 29909 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGA 111721 |||||||| ||||| || |||| || | | || ||||| ||| | || Sbjct 29910 GCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTTCCACCCTGG 29966 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | || || | || ||| ||| || || |||||||| || || ||||| | || | Sbjct 29967 TCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGGAGGTA 30026 Query 111782 CCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAA 111839 || ||||| || ||| ||| ||| | |||| | | | |||| || | || | Sbjct 30027 CCGTTTGTGCCGGCGATATAAGAGCCT--GTGGCACGGATACGGTGGACGTTGAGGCCGA 30084 Query 111840 TACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGA 111899 |||| |||||| ||| || || ||||| | | | ||| | |||||||| | | Sbjct 30085 TACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTATCGTAGATACCCTCAA 30144 Query 111900 TTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAG 111959 | ||| ||||| || | | | |||||| ||| | ||| | | || ||||||| Sbjct 30145 TGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGCGGGGTACCAG 30204 Query 111960 CATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGT 112017 | ||||||||||| || | || || | || | | || |||||| || |||||| Sbjct 30205 CGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCT--GGACATGAGGTGGTATGT 30262 Query 112018 CTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTA 112077 ||| | |||| ||||||| || || ||||| | || || ||||| | ||||| Sbjct 30263 CTCAAGGACACGCTCAATGTTGTCTCCCCAAATGCCAACAGCCACTCGCATAATCATGTG 30322 Query 112078 CTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTT 112136 |||||| || | | ||||||| ||| | ||||| | || ||| ||||| | Sbjct 30323 CTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGGAGATATGATC-GCTCCAGGGTCT 30381 Query 112137 TGAGACCAAAGTA 112149 ||| || ||||| Sbjct 30382 TGAAGCCGAAGTA 30394 >seq219 Length=54288 Score = 104 bits (114), Expect = 3e-17 Identities = 343/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || || || || || || |||||| ||||| Sbjct 42762 GCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 42821 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 42822 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 42881 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAA 122837 ||||| ||| ||||| |||| || || | ||| ||||| ||| ||| | | | Sbjct 42882 CCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTTCTTGTCCTGGAT 42940 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || || ||||| | |||||||| ||| || || | ||| | || || | || Sbjct 42941 CCACTTGATGGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAA 43000 Query 122898 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956 | | | | | | | | ||||| | ||| |||| || | || ||||| | Sbjct 43001 GAGGTAGGTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCT 43059 Query 122957 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 || || | | | ||| ||| | || | ||||||| | || || ||| ||| Sbjct 43060 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 43118 Query 123016 TGAACCTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 |||||||| |||| ||| | | ||||| ||||| || || || |||| Sbjct 43119 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGC 43177 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 123131 |||||| |||||||||| ||||| | ||| || | || |||| || | ||||| Sbjct 43178 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 43237 Query 123132 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||| | ||| ||||||| ||||| || || || ||||| Sbjct 43238 GTCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 43279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020703274400