Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq135 242 5e-59 seq219 143 3e-29 >seq135 Length=88816 Score = 242 bits (268), Expect = 5e-59 Identities = 1170/1835 (64%), Gaps = 49/1835 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| || ||| ||| ||||| | || ||||||||||| || |||||||| | Sbjct 28573 TGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 28632 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | |||||| || | |||| | || ||| | |||| Sbjct 28633 CAAGCTTCCAGCCAGTGAAATGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 28692 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| ||||| ||||| ||||| || || || || | ||| | | || Sbjct 28693 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGA-CA 28751 Query 117985 CATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 || || | |||| | ||||| |||||| |||| ||| ||| || || | || Sbjct 28752 -AT--TTGACGTTGAGAAATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGA 28808 Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 118100 || | || || ||||| || || | | | ||| | | ||||||| | | Sbjct 28809 ATGTTGGGAATGTTCTGGATAGAGCCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCG 28868 Query 118101 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAAC 118157 ||||| || || | | ||||||| |||| || |||||||| ||| Sbjct 28869 GACCAAAGGCCGGTATCGACAAGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAAC 28925 Query 118158 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217 || || || ||| |||| | | ||||| |||| ||||| |||||||| ||||| ||| Sbjct 28926 TCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAACACTCGTTG 28985 Query 118218 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 118277 ||||||||||| |||| ||| ||| |||||||| || || | ||| | |||||| || Sbjct 28986 TTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCGACGAGCAAGCTGTTGCGA 29045 Query 118278 AGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCC 118337 ||||| | ||| |||| | |||||||| | ||||| || | | | | || Sbjct 29046 AGACCGTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCCCACAGGTCGGTGGGCTTG 29105 Query 118338 CCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCA 118397 | | |||||| ||| | || || || |||| || || || ||||||| |||| | | Sbjct 29106 ACATCCCACATGTCATATTGAAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACGAA 29165 Query 118398 TATGGGCCCTCAACCTCCGCCAATTC---GGAGCTCGCCTCGAGGGCTGCGTGATACATT 118454 || || || ||||||| || | || ||| ||||| ||||| || || || || Sbjct 29166 TAAGGACCTTCAACCTTGGCAATCTCCATAGAG---GCCTCAAGGGCAGCATGGTAGATG 29222 Query 118455 GTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCAC 118514 || ||||| || | |||| | || ||| || || || | || | ||| Sbjct 29223 GTCTCAAAGATTTGCTTGTTCAGCTCACGAGCTTCGGGTGATTCGAAGGGAAGAC-GCAG 29281 Query 118515 A-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 118573 | || || |||| || || || |||||||| | ||||| || || || | | || Sbjct 29282 AGCAAGGAAAGCATCAGCAAGTCCCTGGACACCAACACCAATGGGTCGGTGACGGCTGTT 29341 Query 118574 AGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 118633 || ||||| || || || || | ||| |||||| | | || || || Sbjct 29342 GCTGTTGCGAGCCTCCTGAACAGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACG 29401 Query 118634 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 118693 | || |||||||| | ||| |||||||||| | ||| | | | | | | Sbjct 29402 GACAACCACCTTTGTAACTTCGTGAAGCTTTTTAAAGTCATAGCATCCTTCGTTGTAGTC 29461 Query 118694 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 118753 |||| | ||| || || | || |||| || || |||| | |||||| ||| Sbjct 29462 GACAAAAGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCATCAGGCGCAGA 29521 Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||||| ||||| || ||||| | ||| || || ||||| |||| |||||| || || Sbjct 29522 GTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTT 29581 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||| ||| || ||||||||| |||||| | || | || ||||| || |||| Sbjct 29582 GCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGC 29641 Query 118874 CTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932 || || |||| | ||| | | || | |||| | | ||| | | || ||||| | Sbjct 29642 CTCCAGGATAGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCGACCACGTCCCTCCT 29700 Query 118933 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992 ||| ||||| || || || || || || || || | || | || || || | Sbjct 29701 TCTCATACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGG-G 29759 Query 118993 CCTT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAGA 119049 | || || ||||| | | || ||| | ||| || ||| || ||||||||||| | Sbjct 29760 CATTCATTAGGGCACATCAAAGTCCAAT--CCAAGTTCTTCTCGACGCGCTTCATGAACA 29817 Query 119050 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 119109 | || ||||||||||| || ||| || || || || | ||||| | || || | Sbjct 29818 GATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGT 29877 Query 119110 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 119169 | || | || | || || | || ||| |||||||| || || ||||| | || | Sbjct 29878 TCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAA 29937 Query 119170 TTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATA 119223 | || | |||| ||| |||||| || || || |||||| ||| || | Sbjct 29938 AGGCACC---AGGACGCTTGTTTCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGA 29994 Query 119224 CACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTT 119281 |||||||||| || |||||||| | ||| || ||||| || ||| ||| ||| || Sbjct 29995 CACGAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCCGGCGATATAAGAGCCT- 30053 Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341 |||| | || | ||||| || | || ||||| || ||| ||| || || || Sbjct 30054 -GTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCCATCTTGGAAATCATGGC 30112 Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401 || | | | | | ||||||| || || || ||| |||| | | | | ||| Sbjct 30113 ACATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAA 30172 Query 119402 GCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 ||| || | ||| || || || ||||||||||||||||| || || | ||| ||| Sbjct 30173 GCATGAGGAGAGCTGA-GCTTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATGGG 30231 Query 119461 TGAACA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 | || | | || |||||| || ||| ||||| | ||| ||||| || || Sbjct 30232 TAAAGAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC 30289 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 119578 ||| || | | || ||||||| ||||| || || || | | | ||||| Sbjct 30290 CCAAATGCCAACAGCCACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATC 30349 Query 119579 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 ||| || |||| || ||||| |||||||| Sbjct 30350 AAGCTTCAGGAGATATGATCGCTCCAGGGTCTTGA 30384 >seq219 Length=54288 Score = 143 bits (158), Expect = 3e-29 Identities = 526/812 (65%), Gaps = 15/812 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| ||| ||| || ||||||||| Sbjct 42474 TACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGAGAAATGTTCTCCATA 42533 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| || || | || | || | ||| | || ||||| Sbjct 42534 AAGTCAAAGGGGTTGGAGGACTTGTAGATCTTCTCGTT-TCCGAGAGCGACAAGCAGACG 42592 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | || |||||||||||| |||| | || |||||| || | || || Sbjct 42593 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGAAGAGCGCA 42652 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | |||| ||| ||| || || || || | |||| | | Sbjct 42653 AGGGAGAGCCTCAGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATGTCACG 42712 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||||| ||| | | || || || | || || || | |||| || Sbjct 42713 GATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGG--CAAG-CAAAGTC 42769 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || |||||| |||||| |||||||| Sbjct 42770 AGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAG 42829 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| | |||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 42830 ACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAAC 42889 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | || || |||| |||||||| |||||||| | ||| | | |||||| || Sbjct 42890 AGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGAT 42949 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||||| ||||| || || || |||| |||| || || | ||||| | | Sbjct 42950 GGCCCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGT 43009 Query 130264 CTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322 | | || | || |||| ||| | || ||||| || ||||| ||| |||| Sbjct 43010 GCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGA 43068 Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 43069 TGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCG 43127 Query 130382 TCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | ||| | | ||||| ||||| || || || ||||||| || ||| Sbjct 43128 CCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCC 43187 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498 ||||| | ||||| | || || | ||||||| || | |||||||||| | | Sbjct 43188 AGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAAA 43247 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| || ||||| | |||||| || ||||| Sbjct 43248 TCCTTGGACAGATCAATCTCCTCGGCGGTCCA 43279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424075896840