Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq135 284 1e-71 seq219 152 6e-32 seq18 141 1e-28 >seq135 Length=88816 Score = 284 bits (314), Expect = 1e-71 Identities = 939/1435 (65%), Gaps = 35/1435 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| ||||| | || ||| || || ||||||| |||| Sbjct 30328 CCACAGCACATGATTATGCGAGTGGCTGTTGGCATTTGGGGAGACAACATTGAGCGTGTC 30269 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || |||||| || | | || | || || | || ||||||| Sbjct 30268 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCGTCCCCCACCCTCT 30211 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || | | || | ||| |||||| | | | || ||||| | Sbjct 30210 TCAACGCTGGTACCCCGCAAGCTCAGCTCTCCTCATGCTTCTTGGTTGACATGAAGGACG 30151 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||| | ||| | | | ||||| || || ||| ||||| Sbjct 30150 ACAGCATTGAGGGTATCTACGATACTTTGAAGACATGTGCCATGATTTCCAAGATGGCTG 30091 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | ||||| || | || |||| | | | |||| | ||| ||| ||| || || Sbjct 30090 GTGGTATCGGCCTCAACGTCCACCGTATCCGTGCCAC--AGGCTCTTATATCGCCGGCAC 30033 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||| ||| || | ||||| || || |||||||| || || ||| ||| || | || Sbjct 30032 AAACGGTACCTCCAACGGTATCATCCCCATGCTTCGTGTCTTCAACAACACTGCCAGATA 29973 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || | ||| ||||| || | | || |||| || ||||| || Sbjct 29972 CGTCGACCAGGGTGGAAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCTTG 29916 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| || | ||||||||||| | || ||||| || | || |||| || Sbjct 29915 GCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCG 29856 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| || || ||| |||||||||||| || ||||| ||||||||| | || ||| | Sbjct 29855 TGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGCGTCGAGAA 29796 Query 104752 GAG--TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCG 104807 || ||| ||||| || | | || || | || || ||||| || | || ||| Sbjct 29795 GAACTTGG--ATTGGACTTTGATGTGCCCTAATGAATGC-CCTGGCCTTGCTGACTGCTA 29739 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865 ||| ||||| || || || || || ||||| ||| | || || || | | | || Sbjct 29738 TGGC-GAGGAATTCGAGGCTCTGTATGAGAAGTATGAGAAGGAGGGACGTG-GTC-GCAA 29682 Query 104866 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 ||| | | |||| | || | ||||| | |||| || || | || || |||||||||| Sbjct 29681 GACTATCCGAGCT-CAGAAGCTGTGGTACTCTATCCTGGAGGCCCAGACTGAGACTGGTA 29623 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | |||||| ||||| || ||| |||| ||||| || || ||||| |||| Sbjct 29622 ACCCCTTCATGCTCTACAAGGATAGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 29563 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 ||| || ||||| ||||| || || || | || | | | |||||| | Sbjct 29562 CCATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTCTGCGCCTGATGAGGTCG 29503 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 105104 |||| || ||| | || || | |||||||| | ||| || | | | || || Sbjct 29502 CTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCTTTTGTCGA-CTACAACGAAGGATGC 29444 Query 105105 T-TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | | |||| || ||||||||||| || || | ||||| ||| | | Sbjct 29443 TATGACTTTAAAAAGCTTCACGAAGTTACAAAGGTGGTTGTCCGTAACCTCAACCGCATC 29384 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 || ||| || | ||||| ||| || ||||| || || | | ||||| || Sbjct 29383 ATCGATGTGAACTACTACCCTGTTCAGGAGGCTCGCAACAGCAACAGCCGTCACCGACCC 29324 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 105282 |||||| | ||||| ||||| || || |||| ||| || || || || | | || || Sbjct 29323 ATTGGTGTTGGTGTCCAGGGACTTGCTGATGCTTTCCTTGCTCTG-CGTCTTCCCTTCGA 29265 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || |||||| || | || || || ||||||||||| || || || || || Sbjct 29264 ATCACCCGAAGCTCGTGAGCTGAACAAGCAAATCTTTGAGACCATCTACCATGCTGCCCT 29205 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 |||||| | ||| | || ||||||| ||||| ||| | || |||| || || Sbjct 29204 TGAGGCCTCTATGGAGATTGCCAAGGTTGAAGGTCCTTATTCGTCATTCAAGGGATCACC 29145 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 105462 || || |||| | ||||||| ||| |||||||| | || ||| | | || Sbjct 29144 CGCCTCTGAAGGCATTCTTCAATATGACATGTGGGATGTCAAGCCCACCGACCTGTGGGA 29085 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| | |||||||| | || |||||| | |||||||| ||||| | ||| | || Sbjct 29084 GTGGGATTCGCTCAAGGAGCAAATTAAGGAGCACGGTCTTCGCAACAGCTTGCTCGTCGC 29025 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || ||| ||| | || ||||||||||| || || || ||||| ||||| Sbjct 29024 CCCTATGCCCACTGCCAGCACTTCCCAGATCTTGGGTAACAACGAGTGTTTTGAGCCCTA 28965 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 ||| | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 28964 CACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAAC 28910 >seq219 Length=54288 Score = 152 bits (168), Expect = 6e-32 Identities = 355/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || || ||| | ||||| || ||||||||| |||| ||||| | | | || Sbjct 43279 TGGACCGCCGAGGAGATTGATCTGTCCAAGGATTTGCACGACTGGAACAACCGCCTGAAC 43220 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||||| || || || ||| Sbjct 43219 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATT 43160 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | || | ||||| || |||| | || || ||| Sbjct 43159 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 43101 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||||||| | |||| Sbjct 43100 CTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACATACTCTCTGCTCA 43042 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733 | |||| || | ||||| | | | | | | | | ||||| | || || | || Sbjct 43041 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCACCTACCTCTTCAACGCTATTGAGAC 42984 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 | || || |||| ||||| || || ||||| || |||||| | | |||| | | Sbjct 42983 TATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTC 42924 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||||| |||| ||| | || ||||| ||||||||||||||||||| || Sbjct 42923 -TTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAG 42865 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| | | || | |||||||||||| ||||||||||||| ||||| |||||||| Sbjct 42864 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCA 42805 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 42804 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 42762 >seq18 Length=239243 Score = 141 bits (156), Expect = 1e-28 Identities = 284/414 (69%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||||||||| || ||||| | || || | || ||||| ||| | ||||| || |||| Sbjct 111133 ATCAAAGCGGCCAGGACGCATCAGGGCCTTGTCCAGGATGTCAGCACGATTGGTACCGGC 111192 Query 9586 GATGACAACAATACCTGTT-TC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | |||||| | |||||| || | | | || || ||||| ||||| | || |||||| Sbjct 111193 CAAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTGAGAATCTGGTTA 111250 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCC--CA 9701 | || ||| ||||| ||||| | | |||| | | || || || || || Sbjct 111251 AGGGTAGCTTCGCGTTCGTCATTTCCACCGAATCCACGACCGCT---TTCCTGTCGAGCA 111307 Query 9702 CGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 |||| ||| || || |||||||||| |||||| || ||| | ||| | | Sbjct 111308 CGGCCGATAGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCATTCTTTCGACCTTCG 111367 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 |||| || || ||||| || | ||||| ||||| ||||||||||| || | | Sbjct 111368 GCAAACAGGTCTCGTACTCGAGACGGACCCACGCCAACGAACATCTCCACGAACTCAGAA 111427 Query 9815 GCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 || || || | ||| ||||| ||| || || ||| |||| |||||||||||| Sbjct 111428 CCGCTCACGCTGAA-GAATGGGACGCCAGACTCTCCAGCAGTGGCCTTGGCGAGAAGAGT 111486 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||| ||||| ||||| || | ||||| ||||||||| |||||||||||||| Sbjct 111487 CTTTCCCGTTCCTGGGGGGCCGGAGAGGATGGCACCTCGAGGAATCTTGGCGCC 111540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250308596360