Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq54 132 1e-25 seq38 131 5e-25 seq14 113 1e-19 seq5 96.9 1e-14 >seq54 Length=139347 Score = 132 bits (146), Expect = 1e-25 Identities = 472/729 (65%), Gaps = 8/729 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG-TGTAGA 349263 || ||||| | |||||||| || ||||| || | | | | | | || || ||| || Sbjct 62429 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGGTGT-GA 62487 Query 349264 AATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAAC 349323 || ||||| || || || |||||| |||| || || || | |||||| || ||||| || Sbjct 62488 TATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 62547 Query 349324 TGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGT 349383 |||||| ||||||||||| | || || || || | || || || | || || || Sbjct 62548 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 62607 Query 349384 TTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || || || |||||| | |||||| | | || | ||| || ||||| | Sbjct 62608 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGACGCCGAGGTTCAGGCTGATAT 62667 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || || || || | | || | | ||| | | | || | | ||||| || Sbjct 62668 GAAGCACTTCCCCTTCAAGATCGT-CGACAAGGCCTCCA--AGCCCGTCGTCGAGGTCGA 62724 Query 349504 ATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || || || || || ||||| || || || || ||| | | | Sbjct 62725 GTTCAAGGGCGAGACCAAGACC-TTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCA 62783 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | || || || || | || | || || | | || || || |||| Sbjct 62784 AGATGCGTGAGACCGCCGAGGCCTACCTGGGCGGCACCGTCAACAACGCCGTCATCACTG 62843 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || ||||||| || || || || || || |||||| | Sbjct 62844 TCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTGCCG 62903 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || || || || ||||| ||||| || ||||| || || |||| Sbjct 62904 GTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCTTG 62963 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | || || || | || || || ||| | |||||||||||||| | Sbjct 62964 ACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGTACTTTCG 63023 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || |||| ||||| || || || || || | ||||| ||||| | Sbjct 63024 ATGTTTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACA 63083 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || | ||||| || ||||| || || ||||| || || || || || || || | Sbjct 63084 CTCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTCGTCAACGAGTTCA 63143 Query 349923 AGCGTCAAG 349931 |||| |||| Sbjct 63144 AGCG-CAAG 63151 >seq38 Length=159530 Score = 131 bits (144), Expect = 5e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| | ||||| || ||| || || || || || || Sbjct 139234 CCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 139175 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || ||||| || || || ||||||||||| ||||| ||||| ||||| ||| Sbjct 139174 AGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 139115 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || | ||| ||||| || || | |||||||| || || Sbjct 139114 ATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACC 139055 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | |||||| ||||||| || || || || |||||||| Sbjct 139054 TCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||||||||| || || || || || || Sbjct 139010 CATACCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 138951 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 138950 GGACAGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGG 138891 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | ||| |||| || Sbjct 138890 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTC 138831 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||| ||||| || ||||| || Sbjct 138830 GACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGAC 138792 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | ||||| || ||||| || || || || || || Sbjct 138725 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 138666 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || || || ||||| | || ||||| ||||| Sbjct 138665 GGACAGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 138606 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 138605 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTC 138546 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 138545 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495 >seq14 Length=252920 Score = 113 bits (124), Expect = 1e-19 Identities = 117/150 (78%), Gaps = 5/150 (3%) Strand=Plus/Minus Query 377439 TGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACC 377498 ||| ||| || |||||| || ||||||||| |||| || ||| || || | ||||| Sbjct 244688 TGAGAAT-TTCCTTCAAA-CGAGGCACACCAAGTGTGACGTTC---TTGGAAGACACACC 244634 Query 377499 AGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGC 377558 |||||| ||||||||||| || || | ||||| | ||| |||||||| ||||| || || Sbjct 244633 AGCAAAATGGAAAGTATTCAGCGTCATCTGAGTGGCGGGTTCACCAATGGACTGAGCCGC 244574 Query 377559 AATAACGCCAACCATTTCTCCAGGATTGAC 377588 || ||| ||||||||||| ||||| || || Sbjct 244573 AAGAACACCAACCATTTCACCAGGGTTAAC 244544 Score = 107 bits (118), Expect = 6e-18 Identities = 222/328 (68%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179 ||||| ||||| || || || |||||||| ||| | | | | ||| | || || Sbjct 243991 ATCAAGACCATCTTCACCGTAAAGGAATTGAATAATATCACCCAAAGAGTTACGGACGGT 243932 Query 378180 CATATCATATCTAACCATTAA-ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAAC 378238 ||| ||| | | |||| | |||||| | ||||| | || |||| || |||| Sbjct 243931 TCCATCGTAT-TGAGCATTGAGATCTTCCAGAGCTTTGACGAGACGTCTCTGGATGTAAC 243873 Query 378239 CAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGA 378298 |||| | | || || || ||||||||||| | ||| |||||||| |||| || |||| Sbjct 243872 CAGTCTCAGCTGTCTTGACAGCAGTATCAATAAGACCTTCACGACCAGCCATGGCGTGGA 243813 Query 378299 AGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGC 378358 |||| || || | |||||||| |||| || | | || |||| | || || | || Sbjct 243812 AGAAAAACTCTGATGGAGTAAGACCACGAAGATACGAGTTCTCTACGAAGCCGCGAGCCT 243753 Query 378359 CTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAA 378418 | || || | ||| | ||| || |||| || | || || | || || || |||||| Sbjct 243752 CGGGAGAGTAATCGTCTTTGGTGAAATGGGGAAGCGTTCGGTACTTGAAGCCGAATGGAA 243693 Query 378419 TTCGTTTTCCATCAACATTCTGTTGACC 378446 | || ||||| || ||| ||||||| || Sbjct 243692 TACGCTTTCCTTCGACAATCTGTTGTCC 243665 >seq5 Length=314554 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || |||||||| || || || || || || Sbjct 52322 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 52381 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 52382 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 52441 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | || || | || || Sbjct 52442 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 52501 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 52502 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515226462970517