Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq135 233 2e-56
seq85 114 1e-20
>seq135
Length=88816
Score = 233 bits (258), Expect = 2e-56
Identities = 369/527 (70%), Gaps = 4/527 (1%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
|||||||| |||||| ||| || | ||| | || | |||||| || || | || ||
Sbjct 30275 GCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCGTCCCCCAC 30216
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
||| |||||||||||||| || ||||| | || |||||| |||| | |||||
Sbjct 30215 CCTCTTCAACGCTGGTACCCCGCAAGCTCAGCTCTCCTCATGCTTCTTGGTTGACATGAA 30156
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
||| ||| || || || |||||||| || | ||| |||||| || ||||||
Sbjct 30155 GGACGACAGCATTGAGGGTATCTACGATACTTTGAAGACATGTGCCATGATTTCCAAGAT 30096
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470
| | ||||||||||| || || || | ||| |||||| | ||| | |||
Sbjct 30095 GGCTGGTGGTATCGGCCTCAACG--TCCACCGTATCCGTGCCACAGGCTCTTATATCGCC 30038
Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530
|| || ||||| | || | || ||| | || ||||| || |||||||||||||| |||
Sbjct 30037 GGCACAAACGGTACCTCCAACGGTATCATCCCCATGCTTCGTGTCTTCAACAACACTGCC 29978
Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
| |||||| |||||||||| ||||| || | || |||||||||||||||||
Sbjct 29977 AGATACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCT 29918
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
||||||||||| | | ||||| || || || || ||| || || | |||||| |
Sbjct 29917 TGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTC 29858
Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710
|| |||||||||||| ||||| ||||| || || || |||||| | || |||
Sbjct 29857 CGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGCGTCGAG 29798
Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757
||| || ||| ||| |||||||||| || || ||||| |||||
Sbjct 29797 AAGAACTTGGATTGGACTTTGATGTGCCCTAATGAATGCCCTGGCCT 29751
Score = 104 bits (114), Expect = 3e-17
Identities = 308/461 (67%), Gaps = 23/461 (5%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
|| || |||||| | ||||||| || || ||||| || || || | |||||| ||
Sbjct 29050 GGTCTTCGCAACAGCTTGCTCGTCGCCCCTATGCCCACTGCCAGCACTTCCCAGATCTTG 28991
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|| ||||||||| || ||||| ||||| |||||||||||| ||| || ||| ||
Sbjct 28990 GGTAACAACGAGTGTTTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCT 28931
Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657
|| ||||| | ||||| || ||||||| || | | | | |||
Sbjct 28930 GGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACCGGCCTTTGG 28871
Query 55658 AACCCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TC 55709
||| | || |||| || || |||| |||||| || ||||||| ||
Sbjct 28870 T--CCGATGCTATGAAGAACCGCATCATTGCTGAGAACGGC---TCTATCCAGAACATTC 28816
Query 55710 TGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768
| ||||| | || | |||||| | ||| ||| || ||||||||| | ||
Sbjct 28815 CCAACATTCC-CGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATTTCTCAAC-- 28759
Query 55769 AGTCTGATTGACATGA-GT--GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825
||| |||| | || || || || |||||||| | ||| || ||||||||||| ||
Sbjct 28758 -GTCAAATTGTCCAGATGTCAGCCGACCGTGGTGCTTTCATTGATCAGTCCCAGTCCTTG 28700
Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTAC-GGGTG 55884
|||||| |||| || |||| || ||| |||| | | | ||||| ||| || || ||
Sbjct 28699 AACATCCACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCA-TTTCACTGGCTG 28641
Query 55885 GAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925
|||| || |||||||| || |||||||| ||||| ||||
Sbjct 28640 GAAGCTTGGTCTCAAGACTGGCATGTACTACCTGCGTACCC 28600
>seq85
Length=118840
Score = 114 bits (126), Expect = 1e-20
Identities = 189/270 (70%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTA--ACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362
||| ||||||| ||||| || |||| ||| ||||||||||| || | ||| || |
Sbjct 54143 GTGTAAATGTATAACGAGGACTAGCAGAATCTGAACCACCAGCAAGTCGAGAACCAAAGT 54202
Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422
||||| ||||| | || ||| | ||||| | ||||||||| | ||||||||| |
Sbjct 54203 TACCACTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAATCTTGAGCCAATCCAA 54262
Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482
||||| || || | ||||| ||||| || || ||| | | | ||||| |
Sbjct 54263 TGATCGTCTGCTGCAGTGAAACTTCACCGTGGTGGTAGGCAGTCAGACCAGAGACGTAAC 54322
Query 117483 CCGCCAGCTGAGCCACCT--TCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540
| ||||||| | |||| |||| | |||| || |||| |||||| ||||| || |
Sbjct 54323 CAGCCAGCTCCACAACCTTCTCATCTTTGAC--CACGTTCCTCTTGAAACAGGCGTATAG 54380
Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATC 117570
|||||| || |||| ||||||| |||||
Sbjct 54381 CACCTTTCGTTGACCAGGCTTCAATCCATC 54410
Score = 105 bits (116), Expect = 7e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 152062 CCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCG 152121
||||| || || || | ||||| | ||| ||||||||||| ||||| ||||| | |
Sbjct 54178 CCACCAGCAAGTCGAGAACCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAG 54237
Query 152122 CCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGA 152181
||||| |||| |||||||| | ||||| |||||| |||||||||||||
Sbjct 54238 CCCACAAAATCTTGAGCCAATCCAATGATCGTCTGCTGCAGTGAAACTTCACCGTGGTGG 54297
Query 152182 TACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGG 152241
|| || ||| | | | || ||| || |||| || | | |||||| || | || |
Sbjct 54298 TAGGCAGTCAGACCAGAGACGTAACCAGCCAGCTCCACAACCTTCTCATCTTTGACCACG 54357
Query 152242 TTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
||| |||||| ||||||||| | |||||| || || || ||||| || ||
Sbjct 54358 TTCCTCTTGAAACAGGCGTATAGCACCTTTCGTTGACCAGGCTTCAATCCATC 54410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547206156952200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |