Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq135 233 2e-56 seq85 114 1e-20 >seq135 Length=88816 Score = 233 bits (258), Expect = 2e-56 Identities = 369/527 (70%), Gaps = 4/527 (1%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 |||||||| |||||| ||| || | ||| | || | |||||| || || | || || Sbjct 30275 GCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCGTCCCCCAC 30216 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| |||||||||||||| || ||||| | || |||||| |||| | ||||| Sbjct 30215 CCTCTTCAACGCTGGTACCCCGCAAGCTCAGCTCTCCTCATGCTTCTTGGTTGACATGAA 30156 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || || || |||||||| || | ||| |||||| || |||||| Sbjct 30155 GGACGACAGCATTGAGGGTATCTACGATACTTTGAAGACATGTGCCATGATTTCCAAGAT 30096 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470 | | ||||||||||| || || || | ||| |||||| | ||| | ||| Sbjct 30095 GGCTGGTGGTATCGGCCTCAACG--TCCACCGTATCCGTGCCACAGGCTCTTATATCGCC 30038 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| | || | || ||| | || ||||| || |||||||||||||| ||| Sbjct 30037 GGCACAAACGGTACCTCCAACGGTATCATCCCCATGCTTCGTGTCTTCAACAACACTGCC 29978 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 | |||||| |||||||||| ||||| || | || ||||||||||||||||| Sbjct 29977 AGATACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCT 29918 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||||||||| | | ||||| || || || || ||| || || | |||||| | Sbjct 29917 TGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTC 29858 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 || |||||||||||| ||||| ||||| || || || |||||| | || ||| Sbjct 29857 CGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGCGTCGAG 29798 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 ||| || ||| ||| |||||||||| || || ||||| ||||| Sbjct 29797 AAGAACTTGGATTGGACTTTGATGTGCCCTAATGAATGCCCTGGCCT 29751 Score = 104 bits (114), Expect = 3e-17 Identities = 308/461 (67%), Gaps = 23/461 (5%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || |||||| | ||||||| || || ||||| || || || | |||||| || Sbjct 29050 GGTCTTCGCAACAGCTTGCTCGTCGCCCCTATGCCCACTGCCAGCACTTCCCAGATCTTG 28991 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || ||||||||| || ||||| ||||| |||||||||||| ||| || ||| || Sbjct 28990 GGTAACAACGAGTGTTTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCT 28931 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || ||||| | ||||| || ||||||| || | | | | ||| Sbjct 28930 GGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACCGGCCTTTGG 28871 Query 55658 AACCCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TC 55709 ||| | || |||| || || |||| |||||| || ||||||| || Sbjct 28870 T--CCGATGCTATGAAGAACCGCATCATTGCTGAGAACGGC---TCTATCCAGAACATTC 28816 Query 55710 TGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | ||||| | || | |||||| | ||| ||| || ||||||||| | || Sbjct 28815 CCAACATTCC-CGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATTTCTCAAC-- 28759 Query 55769 AGTCTGATTGACATGA-GT--GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 ||| |||| | || || || || |||||||| | ||| || ||||||||||| || Sbjct 28758 -GTCAAATTGTCCAGATGTCAGCCGACCGTGGTGCTTTCATTGATCAGTCCCAGTCCTTG 28700 Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTAC-GGGTG 55884 |||||| |||| || |||| || ||| |||| | | | ||||| ||| || || || Sbjct 28699 AACATCCACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCA-TTTCACTGGCTG 28641 Query 55885 GAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||| || |||||||| || |||||||| ||||| |||| Sbjct 28640 GAAGCTTGGTCTCAAGACTGGCATGTACTACCTGCGTACCC 28600 >seq85 Length=118840 Score = 114 bits (126), Expect = 1e-20 Identities = 189/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTA--ACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 ||| ||||||| ||||| || |||| ||| ||||||||||| || | ||| || | Sbjct 54143 GTGTAAATGTATAACGAGGACTAGCAGAATCTGAACCACCAGCAAGTCGAGAACCAAAGT 54202 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||||| ||||| | || ||| | ||||| | ||||||||| | ||||||||| | Sbjct 54203 TACCACTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAATCTTGAGCCAATCCAA 54262 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 ||||| || || | ||||| ||||| || || ||| | | | ||||| | Sbjct 54263 TGATCGTCTGCTGCAGTGAAACTTCACCGTGGTGGTAGGCAGTCAGACCAGAGACGTAAC 54322 Query 117483 CCGCCAGCTGAGCCACCT--TCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540 | ||||||| | |||| |||| | |||| || |||| |||||| ||||| || | Sbjct 54323 CAGCCAGCTCCACAACCTTCTCATCTTTGAC--CACGTTCCTCTTGAAACAGGCGTATAG 54380 Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||||| || |||| ||||||| ||||| Sbjct 54381 CACCTTTCGTTGACCAGGCTTCAATCCATC 54410 Score = 105 bits (116), Expect = 7e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 152062 CCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCG 152121 ||||| || || || | ||||| | ||| ||||||||||| ||||| ||||| | | Sbjct 54178 CCACCAGCAAGTCGAGAACCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAG 54237 Query 152122 CCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGA 152181 ||||| |||| |||||||| | ||||| |||||| ||||||||||||| Sbjct 54238 CCCACAAAATCTTGAGCCAATCCAATGATCGTCTGCTGCAGTGAAACTTCACCGTGGTGG 54297 Query 152182 TACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGG 152241 || || ||| | | | || ||| || |||| || | | |||||| || | || | Sbjct 54298 TAGGCAGTCAGACCAGAGACGTAACCAGCCAGCTCCACAACCTTCTCATCTTTGACCACG 54357 Query 152242 TTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||| |||||| ||||||||| | |||||| || || || ||||| || || Sbjct 54358 TTCCTCTTGAAACAGGCGTATAGCACCTTTCGTTGACCAGGCTTCAATCCATC 54410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206156952200