Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq135 268 1e-66 seq38 176 5e-39 seq5 156 5e-33 seq287 125 8e-24 >seq135 Length=88816 Score = 268 bits (296), Expect = 1e-66 Identities = 1130/1760 (64%), Gaps = 67/1760 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||| |||||||| || ||||||||| | ||| Sbjct 28596 GCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAATGC 28655 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | | ||| | | |||||| | || |||| |||||||| ||||| |||||| Sbjct 28656 ATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGA 28715 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATT-GACTTTTGTGGAATTTCCCA 80210 |||||||| ||||| || || | ||| | | |||| ||| || | | ||| ||||| Sbjct 28716 TCAATGAAAGCACCACGGTCGGCTGACATCTGGACAATTTGACGTT-GAGAAATCTCCCA 28774 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACT 80264 || || |||| |||| || | || | ||||||| || || || | | Sbjct 28775 AACAGTCTTGTACAGGGCCTT--GATG-TCGGCGGGAATGTTGGGAATGTTCTGGATAGA 28831 Query 80265 GCCACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTG 80321 ||| || || |||| | || |||| || | ||| | || | | Sbjct 28832 GCC---GTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGGCCGGTATCGAC 28888 Query 80322 CAGATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACG 80378 ||||| || | ||| | | ||| || | || |||| || || ||| || || Sbjct 28889 AAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCAGCAAGGACACGTCG 28945 Query 80379 CAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGT 80438 | | || | ||| | ||||| |||||||| ||||||||| || | |||||| | || Sbjct 28946 CTGGTAGATGTTGGAGGTGTAGGGCTCAAAACACTCGTTGTTACCCAAGATCTGGGAAGT 29005 Query 80439 GCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATC 80498 ||| || || ||||| ||| |||| | || || || || ||||||| ||| || | Sbjct 29006 GCTGGCAGTGGGCATAGGGGCGACGAGCAAGCTGTTGCGAAGACCGTGCTCCTTAATTTG 29065 Query 80499 CTC---GCGCAAATCTGACCAAAAATCAACCCCAA--CGCTG----TGAC--CCCACATG 80547 ||| | || |||| || || || || || || |||| |||||||| Sbjct 29066 CTCCTTGAGCGAATCCCAC------TC--CCACAGGTCGGTGGGCTTGACATCCCACATG 29117 Query 80548 TCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCC 80607 || | || | ||||| || || || || || ||| ||| | | || || || || Sbjct 29118 TCATATTGAAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACGAATAAGGACCTTCA 29177 Query 80608 GTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCC 80667 |||||| | ||| || || |||||| || || || ||| |||||||| | Sbjct 29178 ACCTTGGCAATCTCCATAGAGGCCTCAAGGGCAGCATGGTAGATGGTCTCAAAGATTTGC 29237 Query 80668 TTGTTCACACCGCGCGCCTGTGGGTCGTCGAACG--ACAAGCCCATCATCATGAACACGT 80725 ||||||| | || || | || ||||| | | | || | || | ||| | | Sbjct 29238 TTGTTCAGCTCACGAGCTTCGGGTGATTCGAAGGGAAGACGCAGAGCA--AGGAAAGCAT 29295 Query 80726 CAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCC 80784 |||| || ||||| || || | | || || ||||| || |||| | | || ||| Sbjct 29296 CAGCAAGTCCCTGGACACCAACACCAATGGGTCGGTGACGGCTGTT-GCTGTTGCGAGCC 29354 Query 80785 TCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT 80844 ||| ||| ||||| |||| |||||||| |||||| ||||| || ||| ||| | Sbjct 29355 TCCTGAACAGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTT 29414 Query 80845 GTAACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGA 80898 ||||| || ||||| || | |||||| | || ||| | ||||| || || Sbjct 29415 GTAACTTCGTGAAGCTTTTTAAAGTCATAGCATCCTTCGTTGTAGTCGACAAAAGCAGGG 29474 Query 80899 AGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATT 80958 || || || |||| ||||| || || ||||| |||| | | |||| | || Sbjct 29475 AGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCATCAGGCGCAGAGTACTCAATAATC 29534 Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018 || ||||| | || || || || |||||||| |||||||| |||| |||| Sbjct 29535 TCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG 29594 Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078 || ||||||||| |||| | ||| |||| ||||| ||| | || ||||| | | Sbjct 29595 CAGCTATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAG 29654 Query 81079 TCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCG 81138 | ||| | || | || || |||||| || || | ||||||| | Sbjct 29655 TACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCACGTCCCTCCTTCTCATACTTCTCA 29714 Query 81139 TAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCA 81197 || | ||||| | | || | | ||| ||| ||| | ||||| || |||||||| Sbjct 29715 TACAGAGCCTCGAATTCCTCGCCATAGCAGT-CAGCAAGGCCAGGGCATTCATTAGGGCA 29773 Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257 ||||| ||| || || ||||| || ||||||||| |||||||||||||| Sbjct 29774 CATCAAAGTCCAATCCAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAG 29833 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 ||| ||||||||| ||| || |||| || | || ||||| ||| | || || Sbjct 29834 AGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAG 29893 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG 81377 || || | || || || ||||| ||||| || || | ||| | | || || Sbjct 29894 GAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTT 29953 Query 81378 G---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 | |||||||||| |||||| | |||||| ||| || ||||| | ||| |||||||| Sbjct 29954 GTTTCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGAT 30013 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTG 81492 ||| | || |||||| || || ||||| || || |||| || || || Sbjct 30014 ACCGTTGGAGGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGAC 30073 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 ||| || ||||| ||||| | | ||| |||||| ||||| |||| || || Sbjct 30074 GTTG--AGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTATCG 30131 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || || ||||| ||||| || | |||||||||| |||||| || || | |||| | Sbjct 30132 TAGATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGA--G 30189 Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 ||| | | || || ||||| || || |||| ||| || | || | | | |||| Sbjct 30190 CTTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCTGGACA 30249 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 | |||| || || || ||| || ||| | ||| || ||| || | ||| || | Sbjct 30250 TGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAATGCCAACAGCCACTC 30309 Query 81731 GCATAAACATGTACTGGGGC 81750 |||||| ||||| ||| ||| Sbjct 30310 GCATAATCATGTGCTGTGGC 30329 >seq38 Length=159530 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || || ||||| |||||| | Sbjct 139008 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACAATCACACTGGAGGTGGAGTCATCT 139067 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | || | || || |||||||||||||| ||||| || |||||| Sbjct 139068 GATACCATCGACAATGTCAAATCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 139127 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || |||||||||||||| || || || | ||||||||| ||| ||||| || Sbjct 139128 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGC-GACTACAA 139186 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| ||||| | || | ||||| || ||||| || Sbjct 139187 CATCCAGAAGGAGAGCACCCTTCACTTGGTTCTCCGTCTGCGTGGTGGCCA 139237 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 138495 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 138554 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | || || |||||||||||||| |||||||| |||||| Sbjct 138555 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 138614 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| ||||| |||| || || || | ||||| || Sbjct 138615 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACTACAAC 138674 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| | || | || ||||| ||||| Sbjct 138675 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGCCTTCGTGGTGG 138721 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||| || || ||||||||||| || ||||||||||| |||||| |||| ||| | Sbjct 138792 GTCAAAACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCCGATACCATCGAC 138851 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| |||||||||||||| || Sbjct 138852 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTCATC 138911 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| || ||||| | || || || | ||||| || |||| ||||| Sbjct 138912 TTCGCTGGTAAGCAGCTTGAGGACGGCCGGACTCTGTCCGACTACAACATCCAGAAGGAG 138971 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | ||| | ||||| || ||||| Sbjct 138972 TCTACTCTCCACTTGGTCCTTCGTCTGCGTGGTGG 139006 >seq5 Length=314554 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 52549 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 52490 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 52489 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 52430 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || || ||||||||||| |||||||||| || ||||| ||| ||||| || Sbjct 52429 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 52371 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| |||| || || ||||| Sbjct 52370 CATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 52323 >seq287 Length=39990 Score = 125 bits (138), Expect = 8e-24 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27405 AATGC--AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||||| ||| || || ||||| || || |||||||| || || |||||||| ||||| Sbjct 4667 AATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCC 4608 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || || |||||||||||||||||||| || || Sbjct 4607 TCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAT 4548 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || ||||| ||||| |||||||||| || ||||| | ||||| Sbjct 4547 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTAC 4488 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 4487 AACATCCAGAAGG 4475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300141541680