Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq56 114 1e-20
>seq56
Length=137465
Score = 114 bits (126), Expect = 1e-20
Identities = 273/404 (68%), Gaps = 14/404 (3%)
Strand=Plus/Plus
Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118
||||| ||||| | ||||| ||||| || || || |||||| ||||||||
Sbjct 86606 ACGTAGAACTGGGCAAACATG---TGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTTTT 86662
Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178
|||||||| |||| | ||| || | | || | |||||||| | || || | |
Sbjct 86663 GGGTTCCATGCGCTGAGGATCATTCTGCGATCATAGGGGTTGTTGCGGAGCTTGTGGATG 86722
Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238
| |||||| || || ||| | || | ||| |||||| | ||| || ||
Sbjct 86723 ATCTCGGCCAGCTGGTCGACGCCCTTGCCGGCGTAATCTGCCTTTGCGTCGACATAGTCG 86782
Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298
|| || || |||| ||||||||| ||||| || || || ||||| || | || | ||||
Sbjct 86783 GCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGC 86842
Query 30299 TCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357
|| |||| | |||| | || || | ||| |||||| ||||||||||||| || ||
Sbjct 86843 GTGA-GCCCGACGCTGTCAAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCC 86901
Query 30358 --CTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTC 30414
| || | ||| | | ||||| ||| ||||| || |||||| |||||||| |
Sbjct 86902 GACGTCGCTGAGGG--CGGTGGAGGAGGTGTTGCCCTC-GATGAACCAGAGCAGCTCGGC 86958
Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458
| |||||| ||||| | |||||| |||||||||||||
Sbjct 86959 GATGACGGCGCGGAGGAAGACTCGCTTGGTGGTGAGGAGGGGAA 87002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406303274204388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |