Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq56 114 1e-20 >seq56 Length=137465 Score = 114 bits (126), Expect = 1e-20 Identities = 273/404 (68%), Gaps = 14/404 (3%) Strand=Plus/Plus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||| ||||| | ||||| ||||| || || || |||||| |||||||| Sbjct 86606 ACGTAGAACTGGGCAAACATG---TGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTTTT 86662 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 |||||||| |||| | ||| || | | || | |||||||| | || || | | Sbjct 86663 GGGTTCCATGCGCTGAGGATCATTCTGCGATCATAGGGGTTGTTGCGGAGCTTGTGGATG 86722 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | |||||| || || ||| | || | ||| |||||| | ||| || || Sbjct 86723 ATCTCGGCCAGCTGGTCGACGCCCTTGCCGGCGTAATCTGCCTTTGCGTCGACATAGTCG 86782 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 || || || |||| ||||||||| ||||| || || || ||||| || | || | |||| Sbjct 86783 GCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGC 86842 Query 30299 TCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357 || |||| | |||| | || || | ||| |||||| ||||||||||||| || || Sbjct 86843 GTGA-GCCCGACGCTGTCAAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCC 86901 Query 30358 --CTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTC 30414 | || | ||| | | ||||| ||| ||||| || |||||| |||||||| | Sbjct 86902 GACGTCGCTGAGGG--CGGTGGAGGAGGTGTTGCCCTC-GATGAACCAGAGCAGCTCGGC 86958 Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 | |||||| ||||| | |||||| ||||||||||||| Sbjct 86959 GATGACGGCGCGGAGGAAGACTCGCTTGGTGGTGAGGAGGGGAA 87002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406303274204388