Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq38 104 1e-17
>seq38
Length=159530
Score = 104 bits (114), Expect = 1e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || ||||||||||| || ||||| || || || || ||
Sbjct 139225 AGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGA 139166
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || ||||| ||||| || | |||||| ||||| || || | ||||||
Sbjct 139165 CCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCC 139106
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| |||| ||| || | || || || |||||| |||| ||
Sbjct 139105 TTGTCCTGGATC-TTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGT 139047
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || |||||||| || || || || ||||||||
Sbjct 139046 GATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008
Score = 89.7 bits (98), Expect = 3e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| |||||||| |||||| || ||||| || || || || || ||
Sbjct 138997 AGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGG 138938
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || ||||| || || || | |||||| ||||| || || | ||||||
Sbjct 138937 CCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCC 138878
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 138877 TTGTCCTGGATCTT 138864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314724080331287
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |